RnoEX0036030 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17320525-17329428:+
Coord C1 exon
chr18:17320525-17320717
Coord A exon
chr18:17326194-17326368
Coord C2 exon
chr18:17329267-17329428
Length
175 bp
Sequences
Splice sites
3' ss Seq
ACCTCGCTTTGGTCTGGCAGTCT
3' ss Score
6.74
5' ss Seq
GAGGTACCT
5' ss Score
7.63
Exon sequences
Seq C1 exon
ATTTCACTCGTTTTTACTGTTCATGGGCCATCCCCCTTACGCGATTCGGGAGGTGAACATCAACAAGTTCTGCAGGATCATCAGCGAGTTTGCTCTGGAGTACCGCACGACCAGGGAAAGGGTTCTGCAGCAGAAGCAGAAACGAGCCAACCACAGAGAGAGAAATAAGACGAGAGGAAAGATGATCACTGAC
Seq A exon
TCTGGCAAGTTCTCGGGCAGCTCTCCAGCAGCACCGAGCCAGCCCCAGGGTCTGAGCTATGCTGAGGATGCAGCGGAACATGAGAACATGAAGGCTGTGCTGAAAACCTCGTCTCCTGCTCTGGAGGATGCCACCCCCATGCTTGGTGTCCGCACTCGCAGCCGGGCAAGCCGAG
Seq C2 exon
GATCCACTAGTTCATGGACTATGGGAACTGAGGAGTCACCTAGTGTCCCTGATGATGCAGCTGATGAGATCATGGACCGCATCGTCAAATCAGCCACCCAAGTGCCCAGCCAGCGAGTGGTGCCACGGGAGAGAAAGCGTTCCAGAGCCAACCGCAAATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=0.977 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTGCTCTGGAGTACCGC
R:
GCTCTGGAACGCTTTCTCTCC
Band lengths:
256-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]