DreEX0032791 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:762276-765111:+
Coord C1 exon
chr19:762276-762480
Coord A exon
chr19:764517-764712
Coord C2 exon
chr19:764953-765111
Length
196 bp
Sequences
Splice sites
3' ss Seq
TTAAAACTGTGTGTGTTCAGGCA
3' ss Score
7.15
5' ss Seq
AAGGTCACA
5' ss Score
1.86
Exon sequences
Seq C1 exon
GTTCCACTCGTTCCTGCTGTTCCTGGGTCAGCCGGCGTACAGCGTGCGGGAGATCAGCGTGACGCGCTTCAGTAAGATCATCAGTGAGTTCGCTCTGGAGTATCGAACCACACGAGAGCGAGTCCTGCAGCAGAAGCAGAAACGAGCCGATCACAGAGAGAGGAACAAGACTCGCGGGAAGATGATCACCGACGTCAACACACAG
Seq A exon
GCAGCAGGTCGTGTGTGTGTGAGCAGCAGCAGTAGTGCGCCTCCTGCAGGGCCGCAGATGCAGGTGCAGCCACAGCCACAGCCGTCGCAGCCGCAGGGTTTGTGTGACGCTGAAGATGCAGCCGAACACCAGCAGATGACGGCGGTGCTGAAAACCAGAGACCTGAGGACACGCACACGCACACGAGCAACACAAG
Seq C2 exon
GCCGCAGTGCGTGGGCTCCAGTGAATGAAGAGTCTCAGATAAACACCGAGGACGCAGCGGATGAGATCATGGAGAGAATCGTACGATCAGCCACTCAGAGTCCCCGAGAGCGAGCGCAGCCGCGAGAACGACGACGCTCACGCGCAAACAGAAAATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682-'25-33,'25-32,27-33
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.985 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=50.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACGCGCTTCAGTAAGAT
R:
TCTGAGTGGCTGATCGTACGA
Band lengths:
247-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]