GgaEX6020751 @ galGal3
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
NA
Coordinates
chr2:85699790-85710397:+
Coord C1 exon
chr2:85699790-85699982
Coord A exon
chr2:85707870-85708041
Coord C2 exon
chr2:85710236-85710397
Length
172 bp
Sequences
Splice sites
3' ss Seq
AATCTGCTTTCCTTCCACAGTCC
3' ss Score
10.34
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTTCACTCATTTTTGTTATTTATGGGCCATCCTCCCTATGCGATACGTGAAGTCAACATCAATAAGTTCTGCAAAATTATTAGTGAATTTGCTCTGGAATACCGCACCACCAGGGAACGAGTCCTGCAGCAAAAACAGAAACGAGCTAACCACAGGGAAAGAAACAAGACCAGAGGAAAAATGATCACAGAT
Seq A exon
TCCGGAAAGTTCTCCAGCACCTCACCCTCCTCCCCAGTCCAGCCCCAGGGCCTACAGTACGCCGAGGATGCCGCAGAGCACGAGAACATGAAGGCTGTGCTGAAGACCTCCTCTGTCAGTGGAGAGAGCACCACGACGCTGGGGGTTCGCACTCGCAGCCGGGTCAGCCGGG
Seq C2 exon
GCCGTATCGGTTCATGGAATGCTGGCAATGATGATTCACCTAATGCAACGGATGATGCAGCAGATGAGATAATGGATCGCATTGTAAAGTCCGCCACCCAAGTGCCAAGCCAGCGAGCGGTGCCTAGAGAGAGGAAGCGGTCACGAGCAAATAGGAAGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124-'28-35,'28-34,30-35=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8),PF045238=Herpes_U30=FE(29.0=100)
A:
PF045238=Herpes_U30=PD(14.5=55.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTCTGGAATACCGCACC
R:
TATTTGCTCGTGACCGCTTCC
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]