DreEX0032806 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18804248-18815505:-
Coord C1 exon
chr16:18815313-18815505
Coord A exon
chr16:18808196-18808376
Coord C2 exon
chr16:18804248-18804409
Length
181 bp
Sequences
Splice sites
3' ss Seq
CGATGACTTTGTGTTGTCAGAGT
3' ss Score
4.34
5' ss Seq
GAGGTACAT
5' ss Score
6.75
Exon sequences
Seq C1 exon
GTTTCACTCATTCCTGCTATTTCTGGGCCACCCACCATACGCCATTAGAGAAGTGAGCGTCCACCGCTTCAGCAAGATTCTGAGTGAGTTTGCTCTTGAGTACCGAACCACCAGAGAGCGAGTGCTGCAGCAGAAACAGAAACGAGCCAATCATCGTGAGAGGAACAAGACCCGCGGCAAAATGATCACAGAG
Seq A exon
AGTGGGAAGTTTGCAGGAAGTCCTATGGAGGGTCAGGAGTGTCAACCGCAGGGTTTGGGCTACACAGAGGACGTGACTGAGCATGAGCAGATGACCGCAGTGCTTTGTACCAGCCTGCAGGGTGGCGATAGTCCATCATCTGTCCTTCCTGGCCTTCGCACACGGACCCGAGCCACTCGAG
Seq C2 exon
GTCATACAGCACTTTTGTCCACTGCAAATGAAGACACTTCTAATTGCACAAATGACACAGCAGATGAGATCATGGAGCGGATTGTGAAATCAGCCACTCAGGGCCCCAGTCAGAGAACACAGCCTCGTGAGAGGAGACGTTCCAGAGCAAACCGCAAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904-'31-35,'31-34,34-35
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=0.967 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCACCATACGCCATTAG
R:
CCGCTCCATGATCTCATCTGC
Band lengths:
246-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]