HsaEX0025778 @ hg38
Exon Skipping
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr18:36755119-36760782:+
Coord C1 exon
chr18:36755119-36755311
Coord A exon
chr18:36759118-36759141
Coord C2 exon
chr18:36760608-36760782
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTCCTCTCGGGTAGACT
3' ss Score
8.21
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTCCACTCCTTTTTACTCTTTATGGGCCATCCACCTTATGCAATTCGGGAAGTGAACATAAACAAATTCTGCAGGATTATTAGTGAATTTGCACTAGAGTATCGCACAACCAGGGAAAGGGTTTTGCAGCAGAAACAGAAACGGGCCAACCACAGAGAGAGAAATAAGACCAGAGGGAAGATGATCACCGAT
Seq A exon
ACTGATGAGGAGGAGGAAGTTGAG
Seq C2 exon
TCTGGCAAGTTCTCCGGCAGTTCTCCGGCGCCCCCAAGCCAGCCGCAGGGTCTGAGCTATGCGGAGGACGCGGCTGAGCACGAGAACATGAAGGCTGTGCTGAAAACCTCGTCCCCCTCCGTGGAGGACGCCACCCCCGCGCTGGGCGTCCGCACACGCAGCCGAGCAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775_MULTIEX2-16/18=15-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(12.2=53.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGGGAAAGGGTTTTGCAG
R:
GGAGAACTGCCGGAGAACTTG
Band lengths:
110-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development