DreEX0032809 @ danRer10
Exon Skipping
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18808196-18815505:-
Coord C1 exon
chr16:18815313-18815505
Coord A exon
chr16:18809826-18809849
Coord C2 exon
chr16:18808196-18808376
Length
24 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTGTCTTCTCTGTAGAGT
3' ss Score
9.3
5' ss Seq
GAGGTATGC
5' ss Score
9.12
Exon sequences
Seq C1 exon
GTTTCACTCATTCCTGCTATTTCTGGGCCACCCACCATACGCCATTAGAGAAGTGAGCGTCCACCGCTTCAGCAAGATTCTGAGTGAGTTTGCTCTTGAGTACCGAACCACCAGAGAGCGAGTGCTGCAGCAGAAACAGAAACGAGCCAATCATCGTGAGAGGAACAAGACCCGCGGCAAAATGATCACAGAG
Seq A exon
AGTGATGAGGAAGAGGAGGATGAG
Seq C2 exon
AGTGGGAAGTTTGCAGGAAGTCCTATGGAGGGTCAGGAGTGTCAACCGCAGGGTTTGGGCTACACAGAGGACGTGACTGAGCATGAGCAGATGACCGCAGTGCTTTGTACCAGCCTGCAGGGTGGCGATAGTCCATCATCTGTCCTTCCTGGCCTTCGCACACGGACCCGAGCCACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=1.000 C2=0.967
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGCAGAAACAGAAACG
R:
GTTGACACTCCTGACCCTCCA
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]