RnoEX0036029 @ rn6
Exon Skipping
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17320525-17326368:+
Coord C1 exon
chr18:17320525-17320717
Coord A exon
chr18:17324781-17324804
Coord C2 exon
chr18:17326194-17326368
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTCCTTTCTGGTAGACT
3' ss Score
9.08
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTTCACTCGTTTTTACTGTTCATGGGCCATCCCCCTTACGCGATTCGGGAGGTGAACATCAACAAGTTCTGCAGGATCATCAGCGAGTTTGCTCTGGAGTACCGCACGACCAGGGAAAGGGTTCTGCAGCAGAAGCAGAAACGAGCCAACCACAGAGAGAGAAATAAGACGAGAGGAAAGATGATCACTGAC
Seq A exon
ACTGATGACGAGGATGACACTGAG
Seq C2 exon
TCTGGCAAGTTCTCGGGCAGCTCTCCAGCAGCACCGAGCCAGCCCCAGGGTCTGAGCTATGCTGAGGATGCAGCGGAACATGAGAACATGAAGGCTGTGCTGAAAACCTCGTCTCCTGCTCTGGAGGATGCCACCCCCATGCTTGGTGTCCGCACTCGCAGCCGGGCAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=1.000 C2=0.977
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCAACCACAGAGAGAGA
R:
CCTCAGCATAGCTCAGACCCT
Band lengths:
118-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]