MmuEX0019235 @ mm9
Exon Skipping
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25278620-25284418:+
Coord C1 exon
chr18:25278620-25278812
Coord A exon
chr18:25282869-25282892
Coord C2 exon
chr18:25284244-25284418
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGCCCTGTCCTTTCTGGTAGACC
3' ss Score
9.43
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
ATTTCACTCATTTTTACTGTTTATGGGCCATCCCCCTTATGCAATTCGAGAGGTGAACATCAACAAGTTCTGCAGGATCATCAGTGAGTTTGCCCTGGAGTATCGCACGACCAGGGAAAGGGTTCTACAGCAGAAACAGAAGCGGGCCAACCACAGAGAGAGAAACAAGACCAGAGGGAAGATGATCACTGAC
Seq A exon
ACCGATGACGAGGATGAAGCTGAG
Seq C2 exon
TCTGGCAAGTTCTCTGGCAGTTCTCCAGCAGCACCGAGCCAGCCACAGGGTCTGAGCTATGCTGAGGATGCAGCCGAACATGAGAACATGAAGGCCGTGTTGAAAACCTCCTCCCCTGCGCTGGAGGACGCCACCCCAGTGCTTGGTGTCCGCACTCGCAGCCGGGCAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-'28-28,'28-27,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=1.000 C2=0.962
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATCGCACGACCAGGGAAAG
R:
AACTGCCAGAGAACTTGCCAG
Band lengths:
116-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: