GgaEX0019789 @ galGal4
Exon Skipping
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83438228-83446479:+
Coord C1 exon
chr2:83438228-83438420
Coord A exon
chr2:83443639-83443662
Coord C2 exon
chr2:83446308-83446479
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCCTTTGTCTCCGGTGGCAGACT
3' ss Score
7.01
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GTTTCACTCATTTTTGTTATTTATGGGCCATCCTCCCTATGCGATACGTGAAGTCAACATCAATAAGTTCTGCAAAATTATTAGTGAATTTGCTCTGGAATACCGCACCACCAGGGAACGAGTCCTGCAGCAAAAACAGAAACGAGCTAACCACAGGGAAAGAAACAAGACCAGAGGAAAAATGATCACAGAT
Seq A exon
ACTGATGAAGAAGAGGACACTGAG
Seq C2 exon
TCCGGAAAGTTCTCCAGCACCTCACCCTCCTCCCCAGTCCAGCCCCAGGGCCTACAGTACGCCGAGGATGCCGCAGAGCACGAGAACATGAAGGCTGTGCTGAAGACCTCCTCTGTCAGTGGAGAGAGCACCACGACGCTGGGGGTTCGCACTCGCAGCCGGGTCAGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.369 A=1.000 C2=0.991
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8),PF045238=Herpes_U30=FE(29.0=100)
A:
PF045238=Herpes_U30=FE(3.2=100)
C2:
PF045238=Herpes_U30=PD(14.5=55.2)
Main Inclusion Isoform:
ENSGALT00000037064fB2385
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGAGTCCTGCAGCAAAA
R:
GAGGTGCTGGAGAACTTTCCG
Band lengths:
102-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]