BtaEX0014640 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20671390-20676900:-
Coord C1 exon
chr24:20676708-20676900
Coord A exon
chr24:20672887-20672910
Coord C2 exon
chr24:20671390-20671564
Length
24 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGTCCTCTCGAGTAGACT
3' ss Score
6.22
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTTCCACTCCTTTCTCCTCTTTATGGGCCACCCACCGTATGCGATTCGGGAAGTGAACATAAACAAGTTCTGCAGGATCATCAGTGAGTTTGCACTGGAGTACCGAACCACCAGGGAGAGAGTTCTGCAGCAGAAACAGAAACGGGCCAACCACAGAGAGAGAAACAAGACCCGGGGGAAGATGATCACTGAT
Seq A exon
ACTGACGAAGAAGACGAAGTTGAG
Seq C2 exon
TCTGGCAAGTTCTCTGGCGGTTCCCCAGCGCCCCTGAGCCAGCCGCAGGGCCTGAGCTACGCGGAGGATGCTGCTGAGCACGAGAACATGAAGGCTGTGCTGAAGACCTCGTCCCCTGCCGTGGAGGACGCCACCCCGGCGCTGGGCGTCCGCACCCGCAGCCGTGCGAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=1.000 C2=0.959
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061003fB2787
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGGGAAGATGATCACTGA
R:
GCCTTCATGTTCTCGTGCTCA
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development