RnoINT0061070 @ rn6
Intron Retention
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17320525-17326368:+
Coord C1 exon
chr18:17320525-17320717
Coord A exon
chr18:17320718-17326193
Coord C2 exon
chr18:17326194-17326368
Length
5476 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
ACCTCGCTTTGGTCTGGCAGTCT
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATTTCACTCGTTTTTACTGTTCATGGGCCATCCCCCTTACGCGATTCGGGAGGTGAACATCAACAAGTTCTGCAGGATCATCAGCGAGTTTGCTCTGGAGTACCGCACGACCAGGGAAAGGGTTCTGCAGCAGAAGCAGAAACGAGCCAACCACAGAGAGAGAAATAAGACGAGAGGAAAGATGATCACTGAC
Seq A exon
GTAAGTCTCAGCAACCCAGGTGCCAGAGTAAGAGAAATCATGAGGGCTGCACAATTTTGGAAGGAGGTGTCGTTTTCTCCTTCCTGTTTGTGAACAGCAATGCAAACGTCTCCTCGTTTACAAAGTGCTCTCAAAGCCCTCTTCCGCCATGTTGGTAGAAGTCTGTTGTGTAACACACAGGTACCGAGGCAGTGGAAATTAAGACAGGGAGCCTGGAGGCGGAGCCATGTTGGTGTTAGTTGGTACTGATAGGCGTTGACATTTGATGAGAAGTGGGATGGTGGTGCATAGCGGGTAACGCCACCTAGCATAGGAAGGCAGGTGTATTTGTTTGACATTAAATCAGGGTTTTCATTCTCCTAAAAATGTCAAGTCACTATATAATCAATCAGCCACTCAATTTGAGAAGGTGGATTGACAAACTGATGTTACTTCTCTAAGATGTAACCCGGTAGTCACATAATTTGAGTCACAGAGTATTGGGGTTGGAAGATATCTATCCCAGAGGACATTAATCCTCACAGAAGTTTCTCCACAGCACCTGGGGGTACCCTTGACACGTATCTCCCCATATGGCTGGCTCTCTAGCTTTCTCCTCATCCACAAGCCTACCTAGGCACCATATCACACATCCAGGGAAAGGACCGTGAAGCAGAAAAATGGGCAGGCTAACTGCAGATGTTATATAGACATGGTGTGTTCTGTAACTGGAGCTGGAAGGGACGTAGGAAAGAACTGCAGACTGACAAAGGTGCCCAGCACATAGTTTCTTTCCAGCGTGCCTTTGTGTAACATGAAAGTCAGACTGCTAACTCCTTCATTATTACCAGTACCATTTTGGAAAAAATGAAGACATTTTCGTAGAATTCCCCCTTTCAGGGAATCCTCCTTTCTTTACTTTCTTAAGTAGGCTTGGATGAAACAGGAATCGGAACCGTTAGGTCCTCTTTGGAACCTGTTGGAGAGAGCCTCAATGTGATTTTTTTTTCATTGTTTGTATTAGTGTCCATGAACTTTCCCCACTGGTACAAGAGCTTGTCGTCCTGGGCTTCCCAAGAAGGGGAGTGGAAGGAGTAAGGAGTTAAACAATCAGGACTGCCATCACTCTGGGGGCTTAAGCCTCTGCTGAACTCAAGTCAGGCAGATGTGACTGCAGAGGAAAGACATCAACGAAGACCTTATGGAGGCTGCCATCTGTGGCCAGGAGAGTGTTCACAGTGCAGGCGGAGAGGGAGTGTGTTTACTAAGAGTGAGCATTCCTGAGGCCTCTGACTTCCTGCAGATGCCCAGATGCTCTGACTAAAGATACTTTGTATTTAAAAGGCAGTTCTAAGAGGAGCCATAGACTCTCTGTCCCCTATGCTCCTCTTCTTCCCAAACCTCTTGCTTCCTTGGTTGCTTCTTGACTGTCTCCCAGAAGGAGCCTGTTCTGCAGCCCTTCACAACTCTGAATATTGGTGCTATCAGCCAGGCTATTCCATCCTTGAAAATCTGGTTCCCTTGAATCTTCAGCTTTCTGTGGTATTCAGAAAGCAAATTGGAGCCACTTGGACAAACTCTGACCTACATTTCGTTCCAAAGTGTTATTTTTAAAAGTCTTAAAAAGGAATCATTTATTTCTGTGAAAATTAGACATATTGTAAGGCAAACAACACAAGTCCAATATGCTTATAGTTAGGAAAACACATTAAAATTTCTTGCCAAATTCCTGCAATTTTTTTTAACAGAGCCTCCTACGTTTTAAATTTGTCCTTCTTCAAGAACATTTGGCTCTGGAGAGGTAGACGTTTCTAGAGTGTGATTCAAAAGTATTTAAATTTCTATTAAAATCTGGACAGTACAGATTTCTTCAAAGTTAACTTTCAAACTAGTCCACTTTAGCAGAGATCAAGGTAGTATTTGTGTGGAAAGCCTGCCACCTTCTGGAATATTAGAATATTGTTCCTATAGCCAGACAACCTTTACTTTTCCCAACTCTAAGAAAGGGCTTGCTGTGTGCCCAGCACTAGGGTGCGAGGGCAGACGTGAGAACAGTGAGAGGCAAGGTCATAACCCAGGGATGACACAATCTGATTAGAAAATGATAGTCACAGCTGAAACTGAAGCCACACAGTAGACTCAGAGTTGGGGAGCCCTGAACATTGGAGTTAGAAAGGAGAATTTTTAGAGAATTCTGTAGAGAGTCAGTTTTATTGTAGACACAAAATAAATAGATTTGTATGGTAGCAGTGTACAATAAGTGTGCGGGAACTCTGGGAGACTGCCTTGTCTGATCTGCTGCCCTCCCCGACCTTCCAAGCTTGCAGTGGCCCCTTTCCCACAGCCCAGAGGTCCGTCCATGAGTGATCCAGTGTGGGACTCCTTCTTCACCTTTCTGTCCTAACCTGCTTCCAGATCAGGGGTGACTGTTTGAGGGGAACCTGCAGGTGTCCAGGCAAGGAAGCGAACCGCAAAGAGACGAGAATGAAAATGGTTAAGATCGACTCTGTCAACCTGGGTCACAAATTTGGGGAGTCTGATATTAAGCAGTTTATTCCTAACACACTTAAGCCCAGTGTAACTTGGAAAAGTTTCCTGGTGTAGTACAATCTCACACTGCACAAGGAAGTGTAATTATGTGTACGCCCCATTTCCTCCGAGAAGATAGCTTCTAGAGATAAGCTTAAGGGCCTAAGAAGATTCTGGCCTGGTGTCAGTCATACAGACAATTTAGAGGCCATTTGGGCTATTAGCAACCTTTGCTCCTGGCTGTAAGAGCTTGGGGAACCCTGGCTATAGGGGTCATGTAGATTACTAGTCACCTCCAGTCTTGGTTGTAGGAGCTGGCCTGGCCCAGTAGATAACACAGATCACTGGGCTATTGATCACTCCCAATTCCCAGCTTTCTGGATGGAAAAGCAGGTTTTTTTTTTTTTTTTTTTTTAAAAATCTCTCCCATCAGAAAGAAAATCCTGTGTGCTTAATATCCCTGGTTTCTCTGGTTTCTCTGTGGGTACAGAGACCTCTCTGCTGTGCTTCCAGTCCTAATCCAAATGGTCTCTGGGACTCAGCTTGTCAAGTCATAGGACTCCATTGCAGAGGGAAGAAGGACCCTAGGATGGGATCGTTCACCGTTTAGCCCTGACTTCTTCTATAGGAAAGGGACTGATGACCTTTCGAGGGCTTGAAAACACAGCATCTTACATATGTGCATATGCCTGATAAAAAATGCCAACCATCCTGACTAAACCAATAATTCACTCAGTAAGAAGGATGCTAGAGAGGACTTGTTATCTTACAGTCTAAAACTATACTCAGTTCTCAAAAATTCATGCCTGGTTTGTTGGCCTGGCCTCTGGCCTCTGTGGAAATACTTACATTAAAAAGTATGTTGGGTTTAAATCAAGATACTGGCATGATTTTTCATGCTCCCTTTGTATTTATGAGAGGGTCTTTGAAGCACATCTACTGATAAAGTAATTGTAGCACAGTGTCTGTGACTTCTGGTGACTCCCTCGAGGAATGAATAACAACATTCTGTATCTAAGGAGATTGTAGTATAATATGTTGTGCTTGGGAATTTTTTCATGTGTCCTGTATGACCTGTGTAGAAGGCTCCACAGGCTGGGCAGTGAACGACCTAGATCTTGGGATAAAGAGAGGAGGCCTCTGATAGGCATAGCCAGGTAAACAAAGGCCGGTCTACTTACCAAGGCCTTAGAAGCCAGTAGGTAATGGTGGGCCAAGCACACAGAGCCAGCTGCACGAAGAGTACAGAAGCTTAGGAGTGTTCACGGAGGCTGATTACTGACCTTATGGGTTTCCTCGGGAAGTTGACCTGAAGCCCTTCAAATACCTCCTGCCTCCTATCAGTGTGATCTTGGAGCACTGAGAAAGCACCCAGTAAGTATAGAGAGAGAGCCTGGCACCTTCTGACTTACATCAGTGTGCCCTGCTGTTAGCGCCTACTTTCTGTTCTTTGGGTGTGGTCTGTCAGTGAGATTATCTCATCTATGCTGATGTTTGTACCTTCTAAGAATCCTTCTGTCTTCTCTATCTTGTCCTGCCCTGTCCTTTCTGGTAGACTGATGACGAGGATGACACTGAGGTATGACAGTTCACGAGTGTGAAGAATACCACATTTGCCCTTCCCCTGTGTGCTGTAGAGTAACCTAACACAGTCGGCATGAAGTGTTAGCACCGTTTGGAAAACTGCATGGACATCCTCTGATTGGTTTTCATGTGATCTCTAACCATCTGATCAGCTCTTGTCATTGCTGTTAGTACCAGAAACTGAGGCACTCACTAACTACATCTTTCGATGTCCCCGGACCACAACTAATCAGTATTCTGTCACTAGGATCAAGAGAGGCTGGATAAGTGGGCCAGTTTCCCTACCAGACCCCTTCTGTGCTTTTTACAACCCAAGCTGAGCACAGAGCTGCATGTCTGTAATCCTAGAACCCGAGAGACTGAGGCAAGAGAATTATGAGTTTCTGACCAGGGGCATAACAAGGACCAAAAAAGCCCAAACATATAAAGGGCAAAACAAAATAGAATCAGGCTGGGGGTGGAGCTCAGTATTGCAGCCCTTGCTTACACAAAGCTCCGGGTTTGATCCATGGCATCCAAAACAAAAATAAAAACAAAACAGGGTGAATATACAGAGATCCCAGAGTCAAGGAGAAAGGCGAGCAGTGGGAGTTGCCCTGGACACTGAGGCAGGAGAAGCACAGGCAGAGTAAGTCACAGATTTGTCACAGGTCTGTAGCACTGGCTGAGAAGCAAGAACTTGGAGCTGATCTTGGTCCAAGCTCATCCTCTTGTTCTTAATCCAGACGTGCGCATCCAGGGCTCTGTATAGAGTTCTGGACCTCTTAAAACATATATGCCCTGCAGTTTTGAGAAAATCAACCTGTGTTTATAATCCTTGATACAGCAAGCATCTTAACAAAAGTAAACATAGAATGGCAGGATTCAGTTTCAGTTTGAATTTATCTGGCATGTTCTGTTCTGGGACCTGAAGCTCAACACATTTGTGACCTCTGGCAAGCCACGATTCTTGGAGAGTCCCTTTTCTTTTTCCATAAAAGGGAGATGAGGTTAAGTCTACAAGAATCCTCAGAAGTAGCACAGAAAACGAAGCTCAAGACAGTTGGTGTGCAAGACAAATATCAGGACGCAGCAGTGTTCTGTTTGATGTTTAATCTCCCAGGGATTAATGTCAGTCTGTCCGAGGTGGCATCCACTCCAGGGCAGGATGGAGAGCAGCGAAGGTCCTTCTAGGGCCTCTCTTTCTGGTGTTAGATCTTCTTGCAGAGAGATCTGTGCCCTTGCTGGCGTTCTCCATGTCTGACAGGACTCCACGATATACTGAACGCACACAAACAAAGAGAAAGCAGGGGGGAGAGTGTTTCCCTTGAGTGGACAGTTTCTAAGCTTGGTGGCCTCTTTGACAAGCGCCCCCCCACATTCTAACCTCGCTTTGGTCTGGCAG
Seq C2 exon
TCTGGCAAGTTCTCGGGCAGCTCTCCAGCAGCACCGAGCCAGCCCCAGGGTCTGAGCTATGCTGAGGATGCAGCGGAACATGAGAACATGAAGGCTGTGCTGAAAACCTCGTCTCCTGCTCTGGAGGATGCCACCCCCATGCTTGGTGTCCGCACTCGCAGCCGGGCAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230:ENSRNOT00000041961:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=0.977
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]