MmuINT0064500 @ mm9
Intron Retention
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25278620-25284418:+
Coord C1 exon
chr18:25278620-25278812
Coord A exon
chr18:25278813-25284243
Coord C2 exon
chr18:25284244-25284418
Length
5431 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGT
5' ss Score
10.93
3' ss Seq
CCCTCACTTTGCTTTTGCAGTCT
3' ss Score
9.5
Exon sequences
Seq C1 exon
ATTTCACTCATTTTTACTGTTTATGGGCCATCCCCCTTATGCAATTCGAGAGGTGAACATCAACAAGTTCTGCAGGATCATCAGTGAGTTTGCCCTGGAGTATCGCACGACCAGGGAAAGGGTTCTACAGCAGAAACAGAAGCGGGCCAACCACAGAGAGAGAAACAAGACCAGAGGGAAGATGATCACTGAC
Seq A exon
GTAAGTTTCCTGGACTCAGGTGCTTCATGCTATGGTTTTTGAAAGTAAATCAAATCATAAGTAGGTCTACAATTTTGGAAGTATATGTTGTTTTCTTCTTCCTGTTTGTGAACAGCAACACAGAAAAGCTTCCTCTTCTACAAATCGCTCTCAGTCCCCTCTTCTGCCACGCCTGTGGAAATCTGTTGTGTAACACAGGAGTACCAGGACAGTGAAAATTAAGACGGGGTGCTTGGAGACATCTTAGTTGATCCTGAGGACAGTTGACATTGCTGAGGGGTGTGTGTGTGCATAGCAGGTAATACCACCTAGCATAGAAAGGCAGGTGCATTTACTGGACATTAAAGCAGAATTTTCATTCTCCTAACAGTGTCATGTGTCAGTTAGCCAGTTGGACCACTCAGTTTGAGAAGGTGAAATGACAAACTGATGTCATTCCTCTAAGACGTAACCTGGTGGTCACATAATTTGAGTCACAGAGTGTTGGGGTTGGAAGATATCCCAGAGGACATTAAGTCTAGCAGAAGTTTCTCCACAGCACCTGAGGTTATCTTCAACAGTTATCTCCCCACATTGCTGGCTCTCTACCTTTCCTCTCACCCATGAGCCTACCTAGGTACTATATCACAGCCAGGGAAAGGATTGTGAAGCAGAAAAAATGGGCAGGCTAACTACAGATGTTGTATGGATGTGGCATGTTCCATAAATGGAGCCAATGTAGACTGGCAAAGGTGCCCAGTGCATGCTTTCTTTCCAATGTGCCTGTGTGTAACATGAAAGTGAGATGCCTCCCTCATGAGTTATTACCAGTAAGCTACAAGTCTCTTTTTGGAAAAAAATATGAAGATATTTTCTTAGAGTCCCCCTTTTCTGGGAATCTTCCTTTCTTTACTTACTTGCCTAGGCATGGATGGAACAGGGAGTTGGAGCCATTAGATCCTATCTGGAACGTGTTGGAGAGAGCCCCAGTGTGATTTTTTTTTCATTGTTTTCATTAGTGTCTGTGACCTTTCTCCATTGGTGCAAGAGCTCGGTGTCCTGGGCTTCCCAAGAAGGGGACAGGGAGGAGTAAAGGGTTAAGCCATCAGAACTTCCAGCGCTTAAGCCTCAGCTGAACTCAAGTCAGGCAGATGTCTCTGCAGAGGAAAGAAATCAATTAAGCCCTTCTGGAGGCTGCCATCTGTGGCCAGGGGAGTGTTAATAGTCAGGCAAAGGAGGGAATGTGGTTACTCTGAGTAAGCATTCCTGAGGCCTCTGACTTCCTGCGGATGCCCAGATGCTCTGACTACAGATGCTTTGTACTTAAAAGGCAGTTCTGAGAGGAGCCATAGACTATCTGTCCCCTATCACCCACTCACTCCCAAACCTCTTGCTTCCTTGGGTGCTGCTTGACTGTCTCCTGGAAGAAGCCTGTTCTGTAGCCCTTCACAACTCTGAATGTTTGTGCTATCAGCCAGGCTATTCCAGCTTTTAAAACCTAGTTCCCTTAGATCTTTGGGTTTCTGGAGTATTCAGAAAGCAAATTGGAGCCACTTGGGCAAGCTCTGACCTACATTTCATTCCAAAGTGTTATTTTTAAAAGTCTTAAAAAGGGATCATTTATTTCTGTGGAAATTAGACATATTGTAAGGCAAACAACACAATTCCAATATGCTTATAGTTAGGAAAACACATTAAAATTTCTTGCCAAATTCCTGAGAATTTTTTTTTTTTAAACAGAGCCTACTAAGTTTTAAATTTGTCCTTCTTTGAGAACATTTGGCTCTGGAGAGGTAATGTTTCTAGAGTGTGGTTCAAAAGTATTTAAATTTCTATTAAAATCTGGACTGTACAGATTTCTTCAATGATGTTAGCTTTTAGACTAGTCCATAGTAGCAGAGGTCAAGGTAGTATTTGTGTGGAAAGCCTGCCACCTTCTGGCATATTAGAATATTGCTACTAGAGCCCGACAGTCTTGGATTTGCCCAACTCTGAGAAAGGCTTGCTGTATGCCCATTACTAGGGTGCCTGGACAGGCATGAGGACAGTGAGAGACAAGGTCATAACCCAGGGATGGACGACACAGTCTGATTAGAAAATGGCATACGCACAGCCAAAACTGAAGCCACAGGGTAGACTCAGAGTTGTGGAGCCTGAACATTGGAGTTAGAAAGGACTTTTAGAGAATTCTGCAGAGAGTCAGTTTTATTGTAGATACAAAATAAATAGGTTTGTATGTTAGCAGCTCACAATGAGAAGTCTGCAGGAACGCTGGAGACTGCCTTCTCTGACCTGCTGTCTCTCCCCAACCTTCCTGCCTACCAAGCATGCTATGGGCCCCTTTCCCACAACCCAGGAGTCCTTCTACAAATGGCCCAGTGACTCGTTCTTCATCTTTCTGTCTTAACCTGGTTTTAGACCTCCAGGGGGACCCTGTAGGTGTCCAGGCAAGGTAACGATCCGCGAAGAGATGAGAATGAAGACAGTTGTTAAGATTGTCTTTGTCAACCAGGATAACAGGTTGGGAAGTCGGATATCAGGCAGTTTATTCCCAACACACTTAAGCCCAGTATAATTTGGAACAGTTTCCTGGTATAATACAATCCCCCACTGCACAAGGAAGTGCAATTATATCAAAACTCAGGGTACATGTCATTTCTGCCGAGAAGATGGGTTCTAGAGATGGGCTTAAGGGCCCAAGGAAGGTCCTGGCCTGGTCTCAGTCAGACAGACAGTGTAGAGGTCATTTGGGCTGTTAGCGATTTCTGGTCCTGGTTGTGGGAGCTTGGGGAAGCCCTGGTTATAAGGGTCATTTAGATTACTAGCTGCCTCCAGCCCTAGCTGTGGGAGTTGGCCTGACCCAATAGATAACACAGACCACTGGGCTATTCATCACTCTCAATTCCCAGCTTTCTGGATGGAAAAACAGGTTTTTAAAAATCTCTCCCATTGGAAAGAAAATCCTGTGTGTTTAATATTCCTAGTTTCTTTAGTTTCTCTGTGGATACAGAGACTTTGTGCTGTGTTTCCAATCATAATCCAAATGGTCTATGGGAACTCAGCTTGTCAAGTCACAGGACTCTATTGCAGAGGGAAGAGGGACCCTAGGATAAGACCCTTCACCTTTTAACCCTGACTACTCCTTCTATAGGAAAGGGACTGATGGCCCATCAAGGCCTTGGGGTGGCTGGAGATGCAAAACACAGCATCTTGCATATGTCCATATGCCTGATAAAAATGCCAGTCATACTGGCTAAACTGATAATTCACTGAACAAGAAGGATGGTAGAGAGGACTTGTTATCTTACAGTCTAAATGTATAATCAGTTCTCAAAAAATCATGCCTGGTCTGGCCTCTAGCCTCTGGAAATACTTATATTAAAAGTGTGTTGAGTTTGAATCAAGATACTGGCATGGTTTTTCATGTTCACTTTATTTATAAAAGGGTCTTCAAAGCACATCTACTGATAAAGTAATTGCAGTGCAATGTCACTTCTGGTGACTGCCTTGAAGACGAACAACAACATTTTACAAAGAGCTTAACTTCGTGTGTTTGAGGATGTTGTAGTATGTTATGTTGTGCTTGGGAAGTTTTTCATATGTCCTGTGTGACCTGTGTGAAGAAAGCCCCACAGGCTGGGCATCAAAGAGCCTAGAACTTGTGATGGGTACAGCCAGGTAAATGAAGGCTGGTCTACTTACTGAGGCCCAGGAAGCCAGTAGGTAATCATGGGCCAAGCAGACATAGCCAGCTGCATGAGTCTAGAAGCTTAGTTGTGTTCAGGGAGGCTGATTACTGACCTCATGGGTTTCCTCAAGAGTTTGACCTAAAGCCCTTCAAATACCTCCTGCCTCCTATCAGTGTGACCTTGGAGCACTGAGAAAGCACCCTGTAAGGACAGAGAGAGCCTGGCCCCTTCTGACTTACGACAGCATACCCTGCTGTTAGTGGCTGCTTTCTGTTTTTTGTTTTTGAACATGATCTGTCAATGAGATTATTTCATCTTTGCTGATGTCTGAGCCTTCTAAGAATCCTTCTGTCTTTTCCATCTTGTCCTGCCCTGTCCTTTCTGGTAGACCGATGACGAGGATGAAGCTGAGGTATGACAATTCATGAGTGTGAAGAATGCCACATTTGCCCTTCCCCTGTGTGCTGTAGAGTGACCTAACAGTCAGCATGAAGTGGTAGCAACATTTAGCACTGGGAAGCTGTGCATGGGCATTTTCTGATTAGTCTTCATGTGATCACTAACCATCTGATCCGCTCTCGTCATTGCTGTTTGTACCAGAGATTGGGGCACTAACTACATTTTGCCATGTCTCTGAGCCACAACTAATCAGTTCTCTGTCACTAGGATCAGATGAGGCTGGAAAAAGTGGGCAGTTTCCCTTCCAGCCCCTTTCTGTGCTTTTTACAATCCAAGCTGAGCACAGAGCTGCACGTCTGTAGTCCTAGAACCTAGAGGCTGAGGCAGGGGAATTGAGAATTTCTGACCAGGGACATAACAAGAACTTTTATCAAATAAAAAAGAATATGTAAAGGGAAAAACAAAATTGGATCAGGCTGGGGATGGAGCTCAGTGGTGCAGGTCTTGCTTGTGCATCAGAAGGCTTTGGGTTTGATCCACAGCATTGGAAACAAAAATAAAAACGAAGCAGGATAAATATACAGAGCATCTCAGAGTCGGGAAGAAAGGTGAAGAGTTACGGTTGGTCCTGGGGACCGAGGAAGGAAAGGCATAGACAGAGTAAGTCACAGATTTGTCACAGTTCTGTAGCACTGGCTGAGAAGCAGCAACTTGGAGCTGATCTTGGTCCAAGCTCATCTTCTTGTTCTTCACTCAGATATAAGCATTGTGTGCATATAAAGCTCTATATAGAGTTCTGGAACACACCTCAGAAAACATATACACCCTGCAGTTTAGAGAAAACCAGCCTGGGTTTAGAATGCTTGTTACAGCAAGCATCTACGTTCTTGACAATTTCAGGCTGAATTTATCTGGCATGTTCTGTTCTGTGGTCTGATGCTCAACACTTTTGTGACCTCTGGCAAGCCACTTATTCTTAGAGAGTCTCTTTTCTTTTTCCATAAAAGGTAGATGAAGTTAAGTCTACCAGAATTCTCAGCATTAGCATAGAAAATGAAGCTCAAGACAGTTGATGGGCAAAGTTTTTCCTTTGATGTTTTGTCAGTCTCCCCTAGGTGCCATCCACTCCAGTGCAGGATGGATCGCAGTGAAGTTCCTTCTGGGGCTTCTCTTTGTGGTGTTAGATCTTCTTGTAGAGAGATATTTGCCGTTGTTGGTATTCTCCATGACTGACAGAACTCCATGATATACTAAATACACACAAAGAGAAAGCAGAGAAGTGTTGCCCGGGAGTGAACACTTTCTAAGCTTGTTGGCCTCCTTGACGAGTGTCCTCACATCTTACCCTCACTTTGCTTTTGCAG
Seq C2 exon
TCTGGCAAGTTCTCTGGCAGTTCTCCAGCAGCACCGAGCCAGCCACAGGGTCTGAGCTATGCTGAGGATGCAGCCGAACATGAGAACATGAAGGCCGTGTTGAAAACCTCCTCCCCTGCGCTGGAGGACGCCACCCCAGTGCTTGGTGTCCGCACTCGCAGCCGGGCAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-Fhod3:NM_175276:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=0.962
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(9.4=53.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: