HsaINT0064181 @ hg19
Intron Retention
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34335082-34340745:+
Coord C1 exon
chr18:34335082-34335274
Coord A exon
chr18:34335275-34340570
Coord C2 exon
chr18:34340571-34340745
Length
5296 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
ACTTCCCCTTGGTTTTGCAGTCT
3' ss Score
8.73
Exon sequences
Seq C1 exon
ATTCCACTCCTTTTTACTCTTTATGGGCCATCCACCTTATGCAATTCGGGAAGTGAACATAAACAAATTCTGCAGGATTATTAGTGAATTTGCACTAGAGTATCGCACAACCAGGGAAAGGGTTTTGCAGCAGAAACAGAAACGGGCCAACCACAGAGAGAGAAATAAGACCAGAGGGAAGATGATCACCGAT
Seq A exon
GTAAGTTTCACACAATCCCTCTCCTTATGTCATTCGTTTTCAAAGTAAGATCAGTCAGGAATCCTCCCCACAGTTAAAAGCTGTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACTATAAAAAATTATCTCTTTTAAAAAGTGCTCTTAAAGTACTCCTCCACCATTTCTGTGAAAATCTGCTAAATAACAAGGAGCTAGGAGATGTAAAGTTCAGAACGTGTGGCTAGAAGAGGAACATGGAACCCATTTTGGTGTGTTGCATGTTGCTGATGACATTAAATGTTTGATTCTATTTTTGTCCTCTGTGATGTGGGTAAAGTTGGATGAAGACAAGTAAAATATAAAAGATAATGCCGCTTATCATAGAAAGACAAATGTACTGATTGGGGCATTGATTCAGAATTTTAATCATCATAACGGTGCTGTGTAACCAATCAGTTGACACATGGACCACCCATTGTGGGCATCTGAATAAACTGATGTGATTGCTCCAAGATACAATCTAATGGGCTCTTGCCAGTCCCTTGAATCACAGGACATCAGGGTGGAAAGAGTTCCCAGAGGACAGTGAATCCAGTAGGAGTTTCCCCATAGCACCCTGGGGAGCCCCTGCACACTTACATGTCTCCCCTGCTCCCGGGCTCTTTCCCCATCTCTCCTGTCTCAGCCCCAAGCCTACCTAGGTCTTGGGGGGCAGTGGATATTCAGATGACAGATGCTCAGTAAAGTGGAGGGTAAAGGGATGCATGACGATGCCAGAGACCAACGGAGGTACATAGTGCAGGTTCCTTTTTCTTAATGTGCCTTTACGAAACATAAAAACCAGGCTAGCATCTCACTTACCTCATCCATTACTGTAAGGTCAGTTCCAGGCAAAAGGCTGAAATTTTCTGGGAATCCTCCTTTAGTCACTATTTATTCTTTCTTGAACAGACTCAACGATAATAAAGTCATCTTTTTTGATATTGACAGGTCATATTTGGAACTTGTTGAAGGACTCTAGAGTGTGATTTTTTTTCATGGTTTGGATTGTTGCCCATGGATTTCTCCCATCTGTGCGTGCATTTGAGTAGCACATGGACTTCTGGCAATAGAGGGAATGGAATGAGGAAAGGATTAAGCCACAGGGCGTGCCATCATCTGGGCAGTTACACATTTCAACTGAACCCTAGTTAGGCAGATTTTTGCTGGGGGAGGAAGAAAACCAATTAGGAAGACCTCACTGAAGCCGCCCTATGTGCACAGACATGTGTGTATGTAGTCAGCCAAGCAGAGGGCACTTGGTTACTGCTCTCTAGAAGTCCACATTCCTGAGGGTCTGACTTACATGGAAGGCCAGACACATTAACTTAGCAATTTTGTTATAATTTTAAGAACCACGGGATAATCATTTCTCTTACCATCCACCTTTGTGTAAGCTCCTTGTTTTCTTGGAATTTTCTGGACCTTTAGGAAGTGCTCAGGTCACTTTTGTGCAGAAGGAGCCCTTTCTACAGCTCTACCCTGCACCCAAGCAGTTCTGAATTCCAGTGCCATCAGCCAAGAGTCTTCTGTATCCTTTCCTGAAATCTCAGTTCAGTAGGATCCACAGCCTCTTGGAAGACAGCAACCCAGGAAGCATGTTGGATCCACTTGGGCAAACTGTGGCCCACATTTTATTCATAGTATTATTTTTGAAAGTTTAAAAAAAGAGATTGCTTATTTTGTGGCTATGAGACACATACAAGCCGAATATGCTTATAGTTATGTGGACACATCAAAATTTCTTGCTAAATTCTTGAGATTTTTTACAGATCCCACTAATTTTTAAATTCTTTCTCTTAAAACATTTGGCTTTCCCAATCATAAACAGAGGTGAATGTTTCTAGAGTTTGATTCAAAAATATTTAAATTCCCATTAAAATCTGGACAGGATAGGCTTCGTCAGGATTCATTCTCAGCCTAGTCCATGTTTTTAATGGCCAAAGTGGCATCATTCATGTAGAAGGATTGCCCTCTGCTGGAACATTAGGATATTGTCCCTTAAGGAAAACTACAGCCTTGGGTTTTTCCAACTCAATTATTAAGGGCTCATTGTGCATCCAGCAGTGCCTGGGACACCAAGGAAGATGTGAGTATAAAGAAAAGCTTATATCCCAAGGACATCATAACCTGGTTAAAAATGGCATATACACAACTTAAACCACTGAAAACAAAGCCAGACAGTAGACTTAGAATCACGGACCCCCTGAACGTTGGAGCTAGAAGAGATTTTAGAGAAAACTGTTTGTAGTAAGTCACCTTGAATGTACATGCTGAATAAAATGAGGATGCAAGTGGTAACATTTAGAGATGAGAGGTCTGAGGGTAAAATCTGCAGCCCCCACGCACCAGCTCCTGAGTGCCTATCCCTCTTCTTCTCCCCGTTTCTGGGTATTCAGAAGGCTTCCTTTTCATCATCCAGGGGTCCTCCCAGGCCAGGATCACTGAGCAACTAATTCCTCATCCTGTGTACAAAGTTGGTCCTAGAGCAAATGGTGACATAGACAAGGCAACACGAGGCACCTACAGCCTTTCTGCCGCATTCACACTCGTGAGGTGGGCTGTGAGAACCCAGGCTGGTCAATCCCAGGCCTCCCACGTTGGAGGGCAGTGGTAATCCTGGGTGAGACCCTTAACCCTTCTCAATGCCAGCTTCCTCTTCTATAGAAAGGGAATGATGATTACTTTTAGGGATGTTGAGCGGGCCAATATTTTATATATGTAGCACCTTGAACATGTGTGAATTTCTGGAAAAATGCCAGCCATCCCAGGTTATATAAATAAACTGTAAGAATTTTTTAAAAGAGAGTAATGGAACAGGACTGTTGTCTCTTGTCACAATGCCATTTGGATGAGGCAGCGTGGAATGTTACGGACTGGAAGTGGTTTGTCATTTTAACTTCCAAAAGCATAGTTCATTCTCAAAACACTTCAATCTGATTTGCTGGCCTGGCCCTGTAACCTCACAGACACTCCTAAATTGAAAGTGTGTTTAATTTATGATCAAGAGATTGACATGACTTTTCACTCTCAATTTATGTTAGAAGAGAGATATTTTATTTAAAGTAACTTAAAGCAGTTTAGTGCTAAAGTAATTAAAAGTATGGAGAGTCAGTTCAGGTGGCTCCCATGAGAAACAGGTGAGATGTTAAAAATAAATTAATTTCATGCTCCTGAGGAGAGAGTAATGTGAACACGCTGCTGGAGCAGTTGTCTCACTTGTCCTGGCTGGCCTGCATATGGAAGGACCAGCGGTAGCCCAGAACCAGCAGCCTGGGCAGGGAGGGATCCTGCGCTCGGGATGGGATGGGAGGGCCGGCAGCTGACAGGCAGAGCCAAGCAAATGGAAGCCAGTCCACTTAGAGGGGCCTTGATGACTGTCAGGCCGTGATGGGTTCATAAGGATGTGGCCAGCCAAGCCATATGGTTCACAGAGCAGGACACTCTCAGCACGATGCACAGCTGCGAGTGACGTTGGTGGTGGTCAGGGAATCGAGTTAGCTGACTGTTACCTCAGGGACAGCCCCAGAAGATTGGCCCGGAGCCGTGTGAGTCCCTCTGGTCATGGGTGATCTTGGAGTTCACACAAGGAGTGTCCAGATGAGGACAAGAGGGTGGGGCCTGGCAGCTCCCAACTCAAGAGGATGTATCCTGGTTGTGGTGACCAGTTTATTTACTTGGAATTTTATGTGACATTGCGATGATCTTTTTGCTGACTTCTGTGCCTTCTAAGAATCCCTTCTGTCTTTTCCGTCCTGTCCTGTCCTGTCCTCTCGGGTAGACTGATGAGGAGGAGGAAGTTGAGGTATGACCATTTATGAACATGAAGAATGCCACATTTTACCACCTCATGTATGCTCTGGTCTAACCTAACATAATCAGCATGAAGTGTCAGCACCATTCAGTGCTTTAAACAATGCATGGACATTTTTCTGGTTGGTTTTCGTGTGATCACTAACCACCTGACAGGGGCTCTCATCATGCCACGTTTGCCAGGGACTGAAGGGTTAAATGCATTTTCCGAGCTGTCCCTGAGGCCCAGCTAATCAGTAACCATGTCACAAGTGGCAGGTTTAGCAGGTCTCTCCCTGCTGCTGGAAAAGTGGACAGAGAATTTTCCTTTGGCAACTTAAATATGAGAACTAGATTCTGGAATAACCACATGAAGAGTCCTGAAATCAAAGAGGAAGTGGGGCAGTGGCCAAGGGCCAGGCTAGAGTCTCTGTCCCCAGCCAGTAGGCAGCCTCTGATGTGTGACCATTTCCTCTGCTGGTGTTAATGGCTCCCATGGGCCAACGTCCATGCAGTGGCAGATGGCAGGGGCTCTTCCCTAGACCCTGGATGCAGGTGCGAGAACCAGAGACCAAGGGGGCTAATTGGCCCTGGAAAATAAGGAGAGAGCCGTGTAGATGCTACAAGCCACAGATTGTCCCCAACCCTGTTGCCATGCCTGAGACACTGGGTGACAAAGGAAGCCAGCAGTCTGTGGAGGTGTTCTTTGCAAATGTTAATCTGACTTTTTGTTCTTCATCCAGGTGTTCGGCATTGTGTACGTATGGTATTCCAGCATACCTCTTTTAAAATATATATGTCCTGACCTTTTGTTCAGTTAGAGAAAATCAGCATGAATTTATGTGTCTTGTTCTGTTTTGGGCCCTGATACCAATTCTTTTGGGGTCCCTGGCAAGCCACATATTCTTGAAGGGCCTCAGTTTCCTTTTCCATAAAAGCAAGGTGGGACTAGGTCTAGAAGAATTCTTCCCAACTCTTAACATGCTAGGATTCTGTGATTGAATCCCACTTTTGTAATTCTACCATCGTAAGTGATACTTAAGAAAAATTTAACTGCTTTCTGACACTAAGTAAAAAAATAAAGCTCAATATGCTTGGTTAACAAGGCATATTTCATTTCAATTCTTATATCAGGGCTTTGGTGTAAGAAACACATTTGGTTTTAGACCTTCCCAGAGCCAATGCCAGTTGCTCCTGACAGCCACCCTTTGAGGGGATCTGAGTGAGTGACAGAGACGGCTACAATGGATGAATGGGTGGTGGTCCTTCTGGGGCCGGGGGCTTTTCTGTCTCATATTAGATCTTCTTGTAGGCACAGATGTTTTGTCATTAGTTAACTTCAGTGACTGCCGTAATGAATGTGTCTGCAAACAAAACAAGACAGAGGAGAGGAGCTTTTCCTCAACCACGGGTTTTAGAAGCTTGAGTTGTCTTTTTGGGGAGTCTCCCTCACCTGCTAACTTCCCCTTGGTTTTGCAG
Seq C2 exon
TCTGGCAAGTTCTCCGGCAGTTCTCCGGCGCCCCCAAGCCAGCCGCAGGGTCTGAGCTATGCGGAGGACGCGGCTGAGCACGAGAACATGAAGGCTGTGCTGAAAACCTCGTCCCCCTCCGTGGAGGACGCCACCCCCGCGCTGGGCGTCCGCACACGCAGCCGAGCAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775-FHOD3:NM_025135:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.369 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=PD(12.2=53.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)