BtaEX6091716 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019876 | DSC1
Description
Bos taurus desmocollin 1 (DSC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174044]
Coordinates
chr24:26304187-26312888:+
Coord C1 exon
chr24:26304187-26304449
Coord A exon
chr24:26304850-26304992
Coord C2 exon
chr24:26312673-26312888
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATTTGATTTCTGAAAACTAGGTA
3' ss Score
5
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCACTGAACTATGAAGTCAATCGCCAAGTTGTTTTGCAAATTGGTGTACTTAACGAAGCACAATTCGCTAAGGCAGTAAACTCAAAAACTACTACGACTATGTGTACTACAGTTGTCACTGTTAAAGTTAAAGACCATGATGAGGGCCCTGAGTGCCAGCCACCAGTAAAAGTCATTCAGAGTGAAGACTGCCTCCCCGCAGGCACAGAGCTCCTTGGATACAAAGCAGTGGACCCGGAAAGGGGCACTGGCGAGGGCTTAAG
Seq A exon
GTATAAGAAGATACAAGATGAAGATAACTGGTTTGAAATTAATGAATACACTGGTGACTTGAAAACTGTAAAAGTGCTAGATAGAGAATCAACATTTGTAAAAAACAACCAATACAATGTTTCTGTGATTGCGTTCGATGCAG
Seq C2 exon
ATGGCAGATCTTGCACTGGAACGTTAGTAGTTTTTTTGGAAGATAAAAATGACCACCCACCGCAGATAAAACAAGAAGAACTGACAATTTGCCGGCATGATAAGGATTATGTTGTCCTCGAACCTACAGATCAAGATGGACCTGACAATGGGCCACCTTTTCAATTCATTCTTGATAATTCTGCCAGCAAACTTTGGACAGTAGAGACAAGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019876-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.020 C2=0.205
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(43.8=55.7),PF0002812=Cadherin=PU(33.3=35.2)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.8),PF0002812=Cadherin=PU(51.2=57.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACAAAGCAGTGGACCCGG
R:
ACTGTCCAAAGTTTGCTGGCA
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]