GgaEX6021412 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJD7]
Coordinates
chr2:105639239-105641463:-
Coord C1 exon
chr2:105641204-105641463
Coord A exon
chr2:105640874-105641016
Coord C2 exon
chr2:105639239-105639454
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATCAAAATTGTTCTTAACAGCTA
3' ss Score
6.28
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGGCTGGATTATGAAAATGCCAAACAAAGGATCCTCGTGATTGCAGTCAACAATGAGGCACCCTACATGCTGGCACCACATTCACAACAAGTCGTTCAGAGCACCTGCACTGTTACAGTGAATGTCCTAGATATAGATGAGGGGCCAGTGTTTAAACCCTGTTTCTTCCGCATGTATGCTAGCGAATGTGATGACATTGGGACAAATATTGGGAAATACCTAGCAGAAGATCCAGAAACTGGAAATAGTGAAGGCATCTG
Seq A exon
CTACAAAATACCACCTGGACAGTGTAACTGGGTCAATATTGATGAAAAATCAGGTGAAGTCAGAACTGTTAGAGTCTTGGACCGAGATCTAGGAGAAGTGAAACGAGGTCAATGCAATATCACAGTCCTCGCAATAGACAGAA
Seq C2 exon
ATGGCAAAACAGGCACTGGAACCCTTCAAGTTGTCATCCAGCGTTGCGACAGGAATTATCTACGGATTCCTACAACTCAGTATACAATGTGCAGAGACAGAAAACCGATCTGTCTCAGTGTAGGGGATGGTGATGACACTTCTTACAGCATGCCCTTAGTCTATCGCGTGACTGACCGTAGCCTGGGTTCCATGTGGAAGATAACACAGCACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(40.0=48.3),PF0002812=Cadherin=PU(33.3=35.6)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACATGCTGGCACCACATT
R:
TAATTCCTGTCGCAACGCTGG
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]