BtaEX6091743 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015238 | DSC3
Description
Bos taurus desmocollin 3 (DSC3), mRNA. [Source:RefSeq mRNA;Acc:NM_001178103]
Coordinates
chr24:26428523-26430915:+
Coord C1 exon
chr24:26428523-26428782
Coord A exon
chr24:26428892-26429034
Coord C2 exon
chr24:26430691-26430915
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTTTTATTTTTTATTAACAGGTA
3' ss Score
11.05
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CCACTGGATTATGAAGAAAGCCATCAAGTGGTCCTGGAAATTGGAGTGGCCAATGAAGCTCCATTTACTAGAGATGTTGCACTCAGGATGACAACCATGAACAGAGCTGTGGTCACAGTTCATGTGAAGGATCAGGATGAAGGGCCTGAATGCAGCCCTGAAGTCCAGTATATACGGATTAAAGAAAACTCCGCAGTGGGTTCAAAGATCAGTGGCTATAAGGCATATGACCCTGAAACTAAAAGTTCCAGTGGTTTAAG
Seq A exon
GTACAAAATATTGCATGATCCTAAAGAGTGGATCACCGTTAATGAAGGTTCGGGCTCATTAGAGACTTACAAAACTTTGGACAGGGAGGTTATAACTCCCAAAAATGATTTGTATAATATTACAGTCCTGGCAATAGATCAAG
Seq C2 exon
ATGGTAGATCATGTACTGGAACCCTCGCAGTTAGCATTGAAGATGTGAATGATAACCCACCAGAAATACTTCAAGATTATCTAGTTATTTGCAAAGGAAACATGGACTATGTTGACATTTCGGCTATTGATCATGACAGTTCCATCAACGGTGCTCCATTTTACTTCAGCTTGGCAAACACTTCTCCAGAAATCAACAGACTATGGACGATCACCAGAGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015238-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.041 C2=0.026
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(40.0=48.3),PF0002812=Cadherin=PU(33.3=35.6)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.1),PF0002812=Cadherin=PU(51.2=55.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCCAATGAAGCTCCAT
R:
TGCGAGGGTTCCAGTACATGA
Band lengths:
246-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]