MmuEX6000417 @ mm10
Exon Skipping
Gene
ENSMUSG00000059898 | Dsc3
Description
desmocollin 3 [Source:MGI Symbol;Acc:MGI:1194993]
Coordinates
chr18:19971378-19974299:-
Coord C1 exon
chr18:19974040-19974299
Coord A exon
chr18:19973784-19973926
Coord C2 exon
chr18:19971378-19971602
Length
143 bp
Sequences
Splice sites
3' ss Seq
AAATTTCTTTTTACTAATAGGTA
3' ss Score
6.87
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
CCACTGGATTATGAAGAAAATCGTCAAGTGACCCTAGAGATTGGTGTGAACAACGAAGCTCCATTCATTAAAGATGTTGCAAACCGAATTCCCACCATGAACCGGGCTATGGTTACAGTACATGTGAAGGATCAGAATGAGGGGCCAGAATGCAAGCCCCCAGAGCAATATGTGCGGATCAAAGAGAACTCAGCAGTTGGGTCTAAGATCAATGGCTACAAGGCCTACGACCCTGAAACCAAGAATAGCAATGGCTTAAG
Seq A exon
GTACAAAAAATTGCAGGATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCGGGGTTGCTTACCATATCAAAAACCCTAGACAGAGAAATAATGGCTCCAAGAAATGACATGTACAATATTACAGTCATGGCAATTGACCAAG
Seq C2 exon
AGGGTAAATCATGCACAGGAACACTTGCAGTGAACATCGAGGATGTGAATGACAACGCACCAGAGATAATTCAAGATTATATTGTTATCTGTAAGCCAAAGATGGGGTACACGGACATTTCAGCTGTGGATCCTGATGAACCTATCCATGGCCCTCCCTTTCAGTTCAACTTGGCAAACACTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059898-'9-13,'9-12,10-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.041 C2=0.079
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(40.0=48.3),PF0002812=Cadherin=PU(33.3=35.6)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGGGGCCAGAATGCAAG
R:
TCCACAGCTGAAATGTCCGTG
Band lengths:
255-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types