HsaEX6038484 @ hg19
Exon Skipping
Gene
ENSG00000134762 | DSC3
Description
desmocollin 3 [Source:HGNC Symbol;Acc:3037]
Coordinates
chr18:28586873-28588491:-
Coord C1 exon
chr18:28588235-28588491
Coord A exon
chr18:28587982-28588124
Coord C2 exon
chr18:28586873-28587097
Length
143 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTTTTTATTAACAGGTA
3' ss Score
10.33
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CCACTGAATTATGAAGAAAACCGTCAAGTGAACCTGGAAATTGGAGTAAACAATGAAGCGCCATTTGCTAGAGATATTCCCAGAGTGACAGCCTTGAACAGAGCCTTGGTTACAGTTCATGTGAGGGATCTGGATGAGGGGCCTGAATGCACTCCTGCAGCCCAATATGTGCGGATTAAAGAAAACTTAGCAGTGGGGTCAAAGATCAACGGCTATAAGGCATATGACCCCGAAAATAGAAATGGCAATGGTTTAAG
Seq A exon
GTACAAAAAATTGCATGATCCTAAAGGTTGGATCACCATTGATGAAATTTCAGGGTCAATCATAACTTCCAAAATCCTGGATAGGGAGGTTGAAACTCCCAAAAATGAGTTGTATAATATTACAGTCCTGGCAATAGACAAAG
Seq C2 exon
ATGATAGATCATGTACTGGAACACTTGCTGTGAACATTGAAGATGTAAATGATAATCCACCAGAAATACTTCAAGAATATGTAGTCATTTGCAAACCAAAAATGGGGTATACCGACATTTTAGCTGTTGATCCTGATGAACCTGTCCATGGAGCTCCATTTTATTTCAGTTTGCCCAATACTTCTCCAGAAATCAGTAGACTGTGGAGCCTCACCAAAGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134762-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.020 C2=0.039
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(39.4=47.7),PF0002812=Cadherin=PU(33.3=36.0)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.1),PF0002812=Cadherin=PU(50.0=52.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCCAATATGTGCGGATT
R:
GGAGCTCCATGGACAGGTTCA
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)