GgaEX6021412 @ galGal3
Exon Skipping
Gene
ENSGALG00000015140 | F1NJD7_CHICK
Description
NA
Coordinates
chr2:109114400-109116624:-
Coord C1 exon
chr2:109116365-109116624
Coord A exon
chr2:109116035-109116177
Coord C2 exon
chr2:109114400-109114615
Length
143 bp
Sequences
Splice sites
3' ss Seq
ATCAAAATTGTTCTTAACAGCTA
3' ss Score
6.28
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GGGCTGGATTATGAAAATGCCAAACAAAGGATCCTCGTGATTGCAGTCAACAATGAGGCACCCTACATGCTGGCACCACATTCACAACAAGTCGTTCAGAGCACCTGCACTGTTACAGTGAATGTCCTAGATATAGATGAGGGGCCAGTGTTTAAACCCTGTTTCTTCCGCATGTATGCTAGCGAATGTGATGACATTGGGACAAATATTGGGAAATACCTAGCAGAAGATCCAGAAACTGGAAATAGTGAAGGCATCTG
Seq A exon
CTACAAAATACCACCTGGACAGTGTAACTGGGTCAATATTGATGAAAAATCAGGTGAAGTCAGAACTGTTAGAGTCTTGGACCGAGATCTAGGAGAAGTGAAACGAGGTCAATGCAATATCACAGTCCTCGCAATAGACAGAA
Seq C2 exon
ATGGCAAAACAGGCACTGGAACCCTTCAAGTTGTCATCCAGCGTTGCGACAGGAATTATCTACGGATTCCTACAACTCAGTATACAATGTGCAGAGACAGAAAACCGATCTGTCTCAGTGTAGGGGATGGTGATGACACTTCTTACAGCATGCCCTTAGTCTATCGCGTGACTGACCGTAGCCTGGGTTCCATGTGGAAGATAACACAGCACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(40.0=48.3),PF0002812=Cadherin=PU(33.3=35.6)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACATGCTGGCACCACATT
R:
TAATTCCTGTCGCAACGCTGG
Band lengths:
257-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]