RnoEX6058151 @ rn6
Exon Skipping
Gene
ENSRNOG00000039969 | Dsc2
Description
desmocollin 2 [Source:RGD Symbol;Acc:1309426]
Coordinates
chr18:11834046-11837923:-
Coord C1 exon
chr18:11837667-11837923
Coord A exon
chr18:11837411-11837553
Coord C2 exon
chr18:11834046-11834270
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCCTTCACTGTGGTTAACAGGTA
3' ss Score
7.7
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCTCTGGACTATGAAGAACGGCAACGGGTGACCCTGGAAATTGGCGTAGTTAATGAAGCCCCGTACACTAGACAGGCTGGTTCAAAGTCATCCATGAGCACAGCTACAGTGACTGTCAACGTGAAAAATCAGGATGAGGGCCCTGAGTGTATCCCTCAAACGCAAACTGTGAGGATTCGAGAAAATGTACCAATTGGTACTAGAAACGATGGGTATAAAGCATATGACCCAGAGACCAAAAACAGCATTGGCATAAG
Seq A exon
GTACAGGAAGTTAAGTGACCCAAAAGGATGGATCACTGTTAATGAAGATTCAGGATCAATCACCATTTTCCGAACTCTGGATCGGGAGGCTGAGACCATCAGAAACGGCATCTACAATATTACAGTCCTTGCATTAGATGCAG
Seq C2 exon
ACGGGAGAAGCTGTACGGGAACTCTGGGAATCTTACTTGAAGATGTGAATGACAACGGCCCATTCATACCCAAGCAGACAGTGGTGATATGCAGGGCTACCATGTCCTCTGCTGAAATTGTTGCGGTTGACCCTGATGAGCCAGCAAATGGTCCACCATTTGATTTTAGTTTGGAGAGTTCTGATTCAGAAGTACGGAGGAGGTGGAAGTTGACAAGAATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039969-'11-10,'11-9,12-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(39.4=47.7),PF0002812=Cadherin=PU(33.3=36.0)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTACACTAGACAGGCTGGT
R:
GGGCCGTTGTCATTCACATCT
Band lengths:
258-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]