DreEX0069064 @ danRer10
Exon Skipping
Gene
ENSDARG00000062750 | si:ch73-74h11.1
Description
si:ch73-74h11.1 [Source:ZFIN;Acc:ZDB-GENE-091204-215]
Coordinates
chr20:17059374-17064210:-
Coord C1 exon
chr20:17063516-17064210
Coord A exon
chr20:17061200-17061342
Coord C2 exon
chr20:17059374-17059595
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACCATTGATTAAATACTCAGGTA
3' ss Score
3.66
5' ss Seq
AAGGCAAGC
5' ss Score
2.46
Exon sequences
Seq C1 exon
GGACTGGATGCTGGGCCGAATGCTGGACTTGGTGCAGGATTGGATTTAGGTGCTGGACTAGATGCAGGACTAGATGCTGAACTGGATGCTGGACTAGATGCTGGACTAGATGCTGGATTAGATGCTGGACTGGATGCTGGAGTGGATTTGGGTGCCGGAATGGATGCAGGTGGAGATGTTGGGCTTAAGCCTGGAGTTAATCCTGGAGCCAAGCCTGGTCCTTCACTTGGTGTCAAGCCAGGGCCAAAACCAGGGCCAAAACCAGGAACAAAACCTGGAACTAGTCCTTCTGGCAAACCTGTAAGCGATCCTGATAAAAAACCAGCTGGGAAAGGTTACCCGGTTAAGATCAGTGTAAACAACCTACCTGACGGGCCTGGCTTCTCACCTTCTGTGAAAGACTTCCCAGTGTCAGAGGATCCAAATGAAGATTTCCCTGTGGTGTTGGGCACCTTTGCTGCTTTAGATGGAGACACTGGAGAACCAGCTGAAAATGTGAG
Seq A exon
GTATGCCAAAGGTCACGACCCCGATAACTGGATAACCATTGATGAGGAAACTGCTGAGATTAAGCTGACAAAGGCTCCAGACAGAGAATCAAAGTTTTTGGTCAATGGAACCTACTTTGCAAAGATTATCTGCATGACTCAAG
Seq C2 exon
ATGTGCCAGCTAAAACCGCTACCGGCACAATAGCATTAAAGGTGGAGGATACCAATGACCACTGCCCCACACTGACCAGCTGCTATCATCAAACTTGTGATAACAATAAAGTGGTAAATGTCACAGCTTTCGATGAGGACGCCGATCCAAACGCCACACCTTTCCAATTTGCTCTGATAGAAGAGGAGAGTGTCGGAAAATGGCAGATGGTGCCAATAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062750_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.531 C2=0.053
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(34.4=14.2),PF0002812=Cadherin=PU(34.0=14.2)
A:
PF0002812=Cadherin=FE(49.5=100)
C2:
PF0002812=Cadherin=PD(15.5=20.0),PF0002812=Cadherin=PU(52.3=61.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTTCCCTGTGGTGTTGGGC
R:
GCAAATTGGAAAGGTGTGGCG
Band lengths:
243-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]