BtaEX6091730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000040584 | DSC2
Description
desmocollin 2 [Source:HGNC Symbol;Acc:HGNC:3036]
Coordinates
chr24:26363845-26370932:+
Coord C1 exon
chr24:26363845-26364095
Coord A exon
chr24:26364446-26364579
Coord C2 exon
chr24:26370705-26370932
Length
134 bp
Sequences
Splice sites
3' ss Seq
TAACTCGTCATTATTCACAGGTA
3' ss Score
7
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
CCACTGAATTATGAAGAAAAACAGCAGGTGACCCTGGAAATTGGTGTAGTTAATGAAGCTCCATATACTGGTACTTCCAGATCCACCACGAACATGGCAACAGTCACTGTTAATGTCCAAAATCAGGATGAGGGCCCTGAGTGTGACCCTCGGGTACAAACTGTTCGAATTAAAGAAAACGTACCAGTGGGAACAAAGACCATTGGTTATAAAGCATACGACCCGGAAACAGGAAGTAGCAGTGGCATAAG
Seq A exon
GTATAAGAAATCAAGTGATCCAGAAGGGTGGGTCGATGTGGATGAAAACTCAGGAGTAATCACAATTTTGAAAAGACTCGATAGAGAAGCCAGAAGTGGTGTATATAATATTTCAATCATTGCCTCAGACAAAG
Seq C2 exon
ATGGGAGAACATGTAATGGAGTCCTGGGGATTGTTCTTGAGGATGTGAATGATAACGGCCCAGTCATACGTCAGTGGACGGTGGTCATCTGTAAAACCGTCATGTCATCGGCCGAGATTGTTGCTGTAGATCCTGATGAACCCATACACGGCCCACCCTTTGACTTCAGTTTGGAAGGTGTTTCTGATTCAGAGGTACTTAGAATGTGGAGACTGACAAAGGTTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040584-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.174 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(38.2=46.4),PF0002812=Cadherin=PU(34.4=36.9)
A:
PF0002812=Cadherin=FE(50.0=100)
C2:
PF0002812=Cadherin=PD(14.4=16.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAATCAGGATGAGGGCCC
R:
CAACAATCTCGGCCGATGACA
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]