MmuEX0015708 @ mm10
Exon Skipping
Gene
ENSMUSG00000024331 | Dsc2
Description
desmocollin 2 [Source:MGI Symbol;Acc:MGI:103221]
Coordinates
chr18:20038053-20041953:-
Coord C1 exon
chr18:20041697-20041953
Coord A exon
chr18:20041435-20041577
Coord C2 exon
chr18:20038053-20038277
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCCTTCACTGTGGTTAACAGGTA
3' ss Score
7.7
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCTCTGGACTATGAAGAACGGCAACAGGTGACCCTGCAAATTGGAGTAGTTAATGAAGCTCCATACACTAGAGAGGCTAGCTCAAAGTCACCCATGAGCACAGCCACAGTGACTGTCACCGTGACAAATCAGGATGAGGGCCCCGAGTGTATCCCTCCAATGCAAACTGTGAGGATTCAAGAAAATGTACCAGTTGGGACTAGAAATGATGGATATAAGGCATATGACCCAGAGACCAGAAGCAGCAGTGGCATAAG
Seq A exon
GTACAGAAAGTTAAGTGACCCAAGAGGGTGGGTCACTGTTAATGAAGATTCAGGATCGATCACTATTTTCCGAGCGTTGGATCGAGAGGCTGAGACTGTCAGAAATGGCATTTACAATATTACAGTCCTTGCGTTAGATGCAG
Seq C2 exon
ATGGGAGAAGCTGTACTGGAACTCTGGGAATCATACTTGAAGATGTGAATGATAATGGCCCATTCATACCCAAGCAGACAGTGGTGATATGCAAGGCTACCATGTCCTCTGCTGAAATTGTTGCAGTTGATCTCGATGATCCAGTGAATGGCCCACCATTTGATTTCAGTTTGGAGAGCTCTGATTCGGAAGTTCAGAGGATGTGGAGGCTAACAAGAATCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024331-'16-17,'16-14,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.698 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(39.4=47.7),PF0002812=Cadherin=PU(33.3=36.0)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAATCAGGATGAGGGCCC
R:
AGCAGAGGACATGGTAGCCTT
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types