RnoEX6058138 @ rn6
Exon Skipping
Gene
ENSRNOG00000017159 | Dsc3
Description
desmocollin 3 [Source:RGD Symbol;Acc:1311782]
Coordinates
chr18:11762966-11765946:-
Coord C1 exon
chr18:11765687-11765946
Coord A exon
chr18:11765431-11765573
Coord C2 exon
chr18:11762966-11763190
Length
143 bp
Sequences
Splice sites
3' ss Seq
AATTTTCATTTTATTAATAGGTA
3' ss Score
7.08
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CCACTGGATTATGAAGAAAATCGTCAAGTGACCCTAGAGATCGGTGTGAACAACGAAGCTCCATTCATTAGAGATGTTGCAAGCCGAATACCCACCATGAATCGGGCCATGGTTACAGTCCAAGTGAGGGATCAGAATGAGGGGCCGGAATGCAAGCCCCGTGAGCAGATTGTACGGATCAAAGAGAACTCAGCAATTGGGTCTAAGATCAATGGCTACAAGGCCTATGACCCCGAAACCAAGAATAGCAATGGTTTAAG
Seq A exon
GTACAAAAAATTGCAGGATCCTAAAGACTGGGTCAGCATTGAAGAAGTTTCAGGATCACTCACCATATCAAAAATCCTGGACAGAGAAATCATGGCTCCAAGAAATGACCTATACAATATTACAGTCATGGCAATTGACCAAG
Seq C2 exon
AGGGTAGATCATGCACAGGGACGCTTGCAGTGAACATTGAGGATATGAATGACAACGCACCAGAGATAATTCAAGATGACATTGTCATCTGCAAGCCAAGGATGGGTTATACAGACATTTCAGCTGTGGATCCTGATGAACCTATTCACGGCCCTCCCTTCCAGTTCGCCTTGGCAAGCTCTTCTCCAGAAGTCAACAGAATCTGGACCCTCAACCAAGTTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017159-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.345 A=0.041 C2=0.092
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(40.0=48.3),PF0002812=Cadherin=PU(33.3=35.6)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=17.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGAACAACGAAGCTCCA
R:
GCGTCCCTGTGCATGATCTAC
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]