MmuEX6000440 @ mm9
Exon Skipping
Gene
ENSMUSG00000044322 | Dsc1
Description
desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]
Coordinates
chr18:20248039-20253538:-
Coord C1 exon
chr18:20253279-20253538
Coord A exon
chr18:20253018-20253160
Coord C2 exon
chr18:20248039-20248251
Length
143 bp
Sequences
Splice sites
3' ss Seq
CTTGCTTTCTGAAAACCTAGGTA
3' ss Score
5.1
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCACTGAACTATGAAGTCAGCCGCCAAGTCACTCTGCAAATTGGTGTCCTTAATGAAGCCCAGTTCACTAACGCTGCCAACGCACAACCACCAACAATGTGCACCACAACTGTCACTGTGAAAATTAAAGACAGAGATGAGGGCCCTGAGTGCCAGCCACCAGTCAAAGTCATTCAGAGCAAAGATGGACTGCCAGCGGGCCAAGAGCTCCTGGGCTACAAAGCGGTGGACCCAGAGACAAGCAGTGGTGAAGGCTTAAG
Seq A exon
GTATGAGATGGTAGGAGATGAAGATAATTGGTTTGAGATTAACAAAATCACCGGAGACTTGAGAACTGTGAAAGTACTGGACAGAGAGTCGAAGTTTGTGAAAAACAACCAGTACAATATTTCAGTAGTGGCGACAGATACAG
Seq C2 exon
CTGGCCGATCTTGCACAGGAACACTGGTAGTTCTTCTGGAAGATTTTAATGACCACCCACCACAGATTGACAAGGAAGTGACCATTTGTCAGCAGGAGAAGGATTTTGCTGTTTTGGAACCTATAGATTTAGATGGGCCAGATAATGGTCCACCTTTTCAGTTCCTTCTGGATAATTCTTCCAGCAAACTTTGGACTCTAGAATCACAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044322-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.061 C2=0.056
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(40.0=48.3),PF0002812=Cadherin=PU(33.3=35.6)
A:
PF0002812=Cadherin=FE(51.6=100)
C2:
PF0002812=Cadherin=PD(14.0=18.1),PF0002812=Cadherin=PU(54.0=65.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACAACCACCAACAATGTG
R:
GTCAATCTGTGGTGGGTGGTC
Band lengths:
251-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: