BtaEX6091725 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019876 | DSC1
Description
Bos taurus desmocollin 1 (DSC1), mRNA. [Source:RefSeq mRNA;Acc:NM_174044]
Coordinates
chr24:26283415-26288255:+
Coord C1 exon
chr24:26283415-26283795
Coord A exon
chr24:26286107-26286191
Coord C2 exon
chr24:26288056-26288255
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTCTTTCTTTTGAGGTT
3' ss Score
6.76
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCCAGTGGCTGCGTTTGGGGGTGTTTTGTACCCCACCCTCCCCAGTTGTAGGAAAACCTCTTTCCATTCCGAGGTAACTGAATTGAAGGACGAAGACTGACCCGGGAATAGGAGGAAAGCAGTTGTCCCATTGCTCCCTCTCCTGTCATTTCTCCCGTTTGCCTGCTGACTTTTCTCCAAACAAAGTTCATCCGCGCCAAAGTGGCAACAGGTTACCCTGCCCAGGTGCCGGCTGTGGGGAATCTGCCGAAGCCGCCCTGTGTATTCCAAGCTGCCCTGTTATCCAGTCACCATCCCTGAGCATCAGGACCACTTCTGATGGCTGTGGCCTCTGCCGCCCCAGGGAGCATCTTCTGGAAGCAGCTCCTATTCTCTCTCCTG
Seq A exon
GTTTTAATATTATTTTGCGATGCTTGTCAGAAAATTTCTCTTCAAGTTCCTTCTCATCTTCGGGCTGAAGCACTTGTAGGCAAAG
Seq C2 exon
TGAATCTGAAGGAGTGTCTCCAGTCGGCCAGCCTAATCCTGTCAAGTGATCCTGACTTCAGGATTCTAGAAGATGGCTCCATTTACACAACACATGACCTTGTTTTGTCTTCTGGAAAGAGTTTTTCGATTTTGCTCTCAGACAGTCAGGGACAGGGGCAGAAGGAGATAGAAATCATACTGGAAGCAGGAGGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019876-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF087586=Cadherin_pro=PU(27.4=79.3)
C2:
PF087586=Cadherin_pro=PD(71.4=89.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGTATTCCAAGCTGCCC
R:
CTTGACAGGATTAGGCTGGCC
Band lengths:
171-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]