GgaEX1003238 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJD7]
Coordinates
chr2:105650168-105655438:-
Coord C1 exon
chr2:105655373-105655438
Coord A exon
chr2:105653145-105653229
Coord C2 exon
chr2:105650168-105650370
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGTTGTTGTTTAGGTA
3' ss Score
10.51
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTCCTCGCCGCTGCCCCGCCGCGCAGCATGGCCCGCGCAGCCCCCCGCCTCGTCCTCGGTCTCCTG
Seq A exon
GTATTGAGCTTGTGCTGTGACGCTTGCAAGAAAGTCACTTTTCATGTTCCCTCTGTGCTCGAGGCCGACACATTGGTTGGCAGAG
Seq C2 exon
TTAATATAAATGAGTGCCTTCAGTCTGCAGAACACATCAGTTCCAGTGATGGGAGTTTCAAAGTTCTGGAAGATGGTTCCGTGTATACAACATCTGCTGTTTCTTTATCTGATGAGAAAAGGACTTTTACCATATTACTTAAAGATCTTCAAGAACACGTAGAAAAGAAAATACTTATTGACTTGGAGACAGATGAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015140_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF087586=Cadherin_pro=PU(27.9=82.8)
C2:
PF087586=Cadherin_pro=PD(70.9=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGTCCTCGGTCTCCTG
R:
CTACGTGTTCTTGAAGATCTTTAAGT
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]