DreEX0028377 @ danRer10
Exon Skipping
Gene
ENSDARG00000039677 | dsc2l
Description
desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
Coordinates
chr20:7297974-7303958:-
Coord C1 exon
chr20:7303629-7303958
Coord A exon
chr20:7300679-7300769
Coord C2 exon
chr20:7297974-7298164
Length
91 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCTCCCTCTCCTCAGGTG
3' ss Score
12.92
5' ss Seq
AAGGTGCGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
CGGGGTGGAGTCTAAACCTCCCAAGGCTTCCCGAGCTCAGGAAGTCCAAGACAAAGCATTAGTTTAACCTGTTTTCTGTACTCAAGACTCCAATTCAACATTGATATATAAAGTCAGAGGCTGAAGCTCGGCCACGCCCGTACTGTAGACTTCAATGGCATGAGAACTCCACCGCGCCCAGAAGGACTTTATCCGAGCCCGACTGTCAGATACACTCAGTTTATGGTGGAGACCGGACACATCCAACTACTGCAGATCACATACCCACACACACACTCTCGCTTCAGGATGTATGAACGCGCGCACTTCGCTGCCTGTCTGCTTGCTTTG
Seq A exon
GTGTTGTTTCAGAGGGCTGAGTCTTGTGACCCGAGGCCTGTGCTTGTGCAGGTTCCCAATACGGTGCCCGCAGGTTATTTCATCACTCAAG
Seq C2 exon
TGACTCTCAATGGCTGTACGGCCATACCTGTGTCCTTCACATCCAGCGACCCTGACTTCACTGTAAATACAGATGGAAGCATTGTTACACTTCGCTCTTTGGTGATCTCAACAAAGAGGTTCTCTGTTCTGGTGCAGGACAACAGCGGCCTTGACTGGAGGGTGGAGATTATCTTGTCTTGTAAAAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039677_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF087586=Cadherin_pro=PU(26.2=67.7)
C2:
PF087586=Cadherin_pro=PD(72.5=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTATCCGAGCCCGACTGT
R:
GCCGTACAGCCATTGAGAGTC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]