MmuEX6000431 @ mm10
Exon Skipping
Gene
ENSMUSG00000044322 | Dsc1
Description
desmocollin 1 [Source:MGI Symbol;Acc:MGI:109173]
Coordinates
chr18:20110044-20114773:-
Coord C1 exon
chr18:20114494-20114773
Coord A exon
chr18:20111963-20112047
Coord C2 exon
chr18:20110044-20110246
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTCCTTTTTTGAGGTT
3' ss Score
6.36
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AACTGGAAGGAGACGACTGGCCAGGGAAGAAGGCCAACCTGTTGCTCCTCCTCCTGTTGCTTATCACTTGCATCCTGACTCTCTTCCAAAGCCACCTCAACCTTGCCAACCTGGCTGCAGAGCATCTTGACAATTGCCAGCATCTGCTTAGCCTCCCTGTGCACTCCAGGCCACCCTATCAGCTGTTCACCGTCCCTGGCCATTGGGACCACTTCAGATGGCTGTGGCCTGTGCTGCCCCAGGGAGCACCTTCTCTAAGCAGCTCCTTTTCTTTCTCCTG
Seq A exon
GTTCTGGTATTATTTTGTGATGCCTGTCAAAAAGTTTCCCTTCACGTTCCCTCTCATCTTAAGGCTGAAACACCTGTAGGCAAAG
Seq C2 exon
TGAATCTGGAAGAGTGTCTCAAATCACCCAGCCTGATCCTGTCCAGTGACCCAGCCTTCAGAATTCTAGAAGACGGCACAATTTACACAACACATGACCTGCTTTTGTCTTCTGAAAAGAGGGGGTTCTCCATCTTGCTCTCAGATGGTCAAGGGCAGGAACAAAAGAAGCTAGAAGTTGTACTGTCAGCAAGAGAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044322-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF087586=Cadherin_pro=PU(27.9=82.8)
C2:
PF087586=Cadherin_pro=PD(70.9=89.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTGCTTAGCCTCCCTGTG
R:
ACAGGATCAGGCTGGGTGATT
Band lengths:
182-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types