HsaEX6038500 @ hg19
Exon Skipping
Gene
ENSG00000134765 | DSC1
Description
desmocollin 1 [Source:HGNC Symbol;Acc:3035]
Coordinates
chr18:28737334-28742819:-
Coord C1 exon
chr18:28742495-28742819
Coord A exon
chr18:28739408-28739492
Coord C2 exon
chr18:28737334-28737536
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTTTTTTTGAGGTT
3' ss Score
6.63
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACTTGTAGGAAAGCCTCTTTGCATTTAGACGTAATTGAACTGGAAGGAAGGAGACTGGCCAGGGAATAGGGGGAAAGAAATTCTCCCGTTGCTCCTCCTACTGTTTATCACTTGCCTCCGGACTGTCTTCCAAACCAAGCTCAGCTGCATCAAGGTGGCAGCAGAATACCCTGTGCAAGTGCCAGCGTCTTCTTAGCCGCTCTGTGCATCCCAGGCTGCCCTGTTATCTGGCCACCGTCCCTGGCCATTGGGACTGCTTCTGATGGCTCTGGCCTCTGCTGCCCCAGGGAGCATCTTCTGTAAGCAGCTCCTTTTCTCTCTCCTG
Seq A exon
GTTTTAACATTACTTTGCGATGCTTGTCAGAAAGTTTATCTTCGAGTTCCTTCTCATCTTCAGGCTGAAACACTTGTAGGCAAAG
Seq C2 exon
TGAATCTGGAGGAGTGTCTCAAGTCGGCCAGCCTAATCCGGTCCAGTGACCCTGCCTTCAGAATTCTAGAAGATGGCTCAATTTACACAACACATGACCTCATTTTGTCTTCTGAAAGGAAAAGTTTTTCCATTTTCCTTTCAGATGGTCAGAGACGGGAACAACAAGAGATAAAAGTTGTACTGTCAGCAAGAGAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134765-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
PF087586=Cadherin_pro=PU(27.9=82.8)
C2:
PF087586=Cadherin_pro=PD(70.9=89.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCCAGCGTCTTCTTAGC
R:
CCGACTTGAGACACTCCTCCA
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)