BtaEX6091828 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33244732-33246155:-
Coord C1 exon
chr24:33246056-33246155
Coord A exon
chr24:33245299-33245351
Coord C2 exon
chr24:33244732-33244837
Length
53 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTCTTCTCTTCCCAGAAT
3' ss Score
9.78
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GGCCATTGCCAATGCAAGCTTCATGTTGAAAGTCCTTCGTGTAGCATCTGCAAACCATTATATTGGAATCTGGCCAAAGAAAACCCTGATGGATGCTCAG
Seq A exon
AATGCCGATGCCACGTGGCGGGAACCATGAGCGGAATTGGAGAGTGTGGGCAG
Seq C2 exon
TTAGATGGTGACTGTCATTGTAAATCCCATGTTGGTGGCGATTCCTGTGACACATGCGAAGATGGATATTTTGCTTTGGAAAAGAGCAATTACTTTGGGTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(31.4=88.9)
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAATGCAAGCTTCATGTTG
R:
GAATCGCCACCAACATGGGAT
Band lengths:
138-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]