DreEX6079178 @ danRer10
Exon Skipping
Gene
ENSDARG00000058543 | lama5
Description
laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
Coordinates
chr23:9731506-9732794:-
Coord C1 exon
chr23:9732695-9732794
Coord A exon
chr23:9731696-9731748
Coord C2 exon
chr23:9731506-9731611
Length
53 bp
Sequences
Splice sites
3' ss Seq
CATTCTGCTGTATTTTGCAGCAT
3' ss Score
9.73
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGCTCTTGTGTGTGTCGGCCGTATGTGGAGGGAGTGGCGTGTGAACGCTGTAAACCTCTCTACTGGAATCTGTCTCCTGATACAATCTATGGATGCTCAA
Seq A exon
CATGTGACTGTAATACAGCAGGAACTTTAAGCGAGGTTGCTGAGTGCACGCAG
Seq C2 exon
CGCACCGGCCAGTGTTTCTGTAAACCCAACGTGTGCAGCGGCACCTGTAACGTGTGCAAGGATGGATTCTTCAACCTCCAGAAGGACAGCTACTTTGGGTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058543-'20-18,'20-17,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(31.4=88.9)
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGTGTGTCGGCCGTATG
R:
TGCACACGTTGGGTTTACAGA
Band lengths:
133-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]