BtaEX0019896 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003061 | LAMA5
Description
laminin, alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr13:55408737-55409232:+
Coord C1 exon
chr13:55408737-55408842
Coord A exon
chr13:55408984-55409036
Coord C2 exon
chr13:55409127-55409232
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTGCCTCTCCCCCAGGCT
3' ss Score
9.74
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCACAGGCCCCCTGTACGTGCCGGGCTCACGTGGAGGGGCCAAGCTGCGACCGCTGTAAACCTGGATTCTGGGGGCTGAGTCCTAGCAACCCTGAGGGCTGTACCC
Seq A exon
GCTGCAACTGTGATCCCAGGGGCACGCTGGGTGGGGCTGCCCAGTGCCAACTG
Seq C2 exon
GGCAACGGCCAGTGCTTCTGCAAGCCCCACGTGTGTGGCCAGACCTGCGCGGCCTGCAAGGACGGCTTCTTCGGGCTGGACCAGGCTGACTACTTCGGCTGCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003061-'22-23,'22-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(31.4=88.9)
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACCTGGATTCTGGGGGCT
R:
CGAAGTAGTCAGCCTGGTCCA
Band lengths:
147-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development