HsaEX6079006 @ hg38
Exon Skipping
Gene
ENSG00000130702 | LAMA5
Description
laminin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6485]
Coordinates
chr20:62335021-62336445:-
Coord C1 exon
chr20:62336340-62336445
Coord A exon
chr20:62335217-62335269
Coord C2 exon
chr20:62335021-62335126
Length
53 bp
Sequences
Splice sites
3' ss Seq
TCCTGCCCTGCTCTCCCCAGGCT
3' ss Score
10.25
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GCACAGGTTCCCTGTATGTGCCGGGCTCACGTGGAGGGGCCGAGCTGTGACCGCTGCAAACCTGGGTTCTGGGGACTGAGCCCCAGCAACCCCGAGGGCTGTACCC
Seq A exon
GCTGCAGCTGCGACCTCAGGGGCACACTGGGTGGAGTTGCTGAGTGCCAGCCG
Seq C2 exon
GGCACCGGCCAGTGCTTCTGCAAGCCCCACGTGTGCGGCCAGGCCTGCGCGTCCTGCAAGGATGGCTTCTTTGGACTGGATCAGGCTGACTATTTTGGCTGCCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130702-'47-39,'47-38,48-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(31.4=88.9)
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTGGGTTCTGGGGACTG
R:
AGTCAGCCTGATCCAGTCCAA
Band lengths:
140-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains