GgaEX1032838 @ galGal3
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7841513-7842714:-
Coord C1 exon
chr20:7842615-7842714
Coord A exon
chr20:7842021-7842073
Coord C2 exon
chr20:7841513-7841618
Length
53 bp
Sequences
Splice sites
3' ss Seq
GTTCATCTTCCCCTCTCCAGGCT
3' ss Score
9.08
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCTCCTGTGCATGTCGGGCATACGTTGAAGGCCCAGCTTGTGACAGATGCAAGCCCTTGTACTGGAACCTGACTCCAGATAACCCTTATGGCTGCACGA
Seq A exon
GCTGCAAGTGTGAGACCAAGGGCACCATCAGTGGAATTGCAGAGTGTCAGCAG
Seq C2 exon
GGCAATGGGCAGTGCTTCTGCAAACCGAACACCTGTGGACAGTTCTGCTCAGCATGCAAAGATGGTTACTTCAGTATGGAGAACACAAATTACTTTGGCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'19-24,'19-21,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(31.4=88.9)
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACGTTGAAGGCCCAGCTTG
R:
ACCATCTTTGCATGCTGAGCA
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]