RnoEX6020600 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175573868-175574312:-
Coord C1 exon
chr3:175574207-175574312
Coord A exon
chr3:175574058-175574107
Coord C2 exon
chr3:175573868-175573973
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCCTGCTCCGTTCTCCTCAGGCT
3' ss Score
9.54
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCACAGGCTCCCTGTACGTGCCGGGCTCATGTGGAGGGGCCAAGCTGTGACCGCTGTAAACCTGGGTATTGGGGACTGAGCTCCAGCAACCCTGAAGGCTGCACAC
Seq A exon
GCTGCAGCTGTGACCCACGAGGCACACTGGGTGGAGTTACTGAGTGCCAG
Seq C2 exon
GGCAATGGGCAGTGTTTCTGCAAGGCTCATGTGTGTGGCAAGACCTGTGCAGCCTGCAAGGATGGCTTCTTTGGCCTGGATCATGCTGACTACTATGGCTGCCGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0005319=Laminin_EGF=PU(30.0=88.2)
C2:
PF0005319=Laminin_EGF=PD(66.0=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGGTATTGGGGACTGAG
R:
TAGTCAGCATGATCCAGGCCA
Band lengths:
139-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]