GgaEX1032794 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106319338-106320809:+
Coord C1 exon
chr2:106319338-106319437
Coord A exon
chr2:106320326-106320378
Coord C2 exon
chr2:106320704-106320809
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCACCTGGGCAGCAT
3' ss Score
7.38
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGCTATTGTCAGTGTCTTCAGCATGTTGAAGGTCCTACGTGTAGTAAATGCAAACCGTTGTACTGGAACCTGGCCGAAGAAAACCCTGAGGGATGTACAG
Seq A exon
CATGCCAGTGCGATGTGAGTGGAACACTAAGTGGAGTTGGAGAATGTCAGCAG
Seq C2 exon
GAAACTGGACGTTGCTATTGCAAATCTAATGTGTGTGGAGATTTCTGTAACACCTGTGAAGCTGGTTATTATGCTCTTGAAAACAAAAATTATTTTGGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(60.8=91.2)
A:
PF0005319=Laminin_EGF=PU(31.4=88.9)
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTTGAAGGTCCTACGTGT
R:
ACCAGCTTCACAGGTGTTACA
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]