GgaEX1032794 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102824478-102825949:+
Coord C1 exon
chr2:102824478-102824577
Coord A exon
chr2:102825466-102825518
Coord C2 exon
chr2:102825844-102825949
Length
53 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCACCTGGGCAGCAT
3' ss Score
7.38
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGCTATTGTCAGTGTCTTCAGCATGTTGAAGGTCCTACGTGTAGTAAATGCAAACCGTTGTACTGGAACCTGGCCGAAGAAAACCCTGAGGGATGTACAG
Seq A exon
CATGCCAGTGCGATGTGAGTGGAACACTAAGTGGAGTTGGAGAATGTCAGCAG
Seq C2 exon
GAAACTGGACGTTGCTATTGCAAATCTAATGTGTGTGGAGATTTCTGTAACACCTGTGAAGCTGGTTATTATGCTCTTGAAAACAAAAATTATTTTGGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'17-22,'17-21,18-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTTGAAGGTCCTACGTGT
R:
ACCAGCTTCACAGGTGTTACA
Band lengths:
146-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]