RnoEX0002298 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3803583-3805202:+
Coord C1 exon
chr18:3803583-3803682
Coord A exon
chr18:3804821-3804873
Coord C2 exon
chr18:3805097-3805202
Length
53 bp
Sequences
Splice sites
3' ss Seq
TACCCTCTTTACCTTCACAGAGT
3' ss Score
9.35
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGTTACTGCCAGTGCAAGCTTCATGTTACAAGCCCTACATGTAGTGTCTGCAAACCACTATATTGGGATCTGGCCAAAGAAAACCCCCGTGGATGCTCAG
Seq A exon
AGTGCCAATGCCATGAGGCAGGGACAGTGAGCGGGATTGGAGAGTGTGGACAG
Seq C2 exon
GAAGATGGTGACTGCAGCTGCAAAGCTCATGTAACTGGTGATGCTTGTGACACCTGCGCAGATGGATATTTCTCCTTGGAGAAGAGCAATTACTTTGGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'19-17,'19-16,20-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(60.8=91.2)
A:
PF0005319=Laminin_EGF=PU(31.4=88.9)
C2:
PF0005319=Laminin_EGF=PD(64.7=91.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTGCAAGCTTCATGTT
R:
GGTGTCACAAGCATCACCAGT
Band lengths:
148-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]