BtaEX6091837 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33212415-33215652:-
Coord C1 exon
chr24:33215544-33215652
Coord A exon
chr24:33213501-33213598
Coord C2 exon
chr24:33212415-33212559
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTCTTATATTTGTTGGACAGCAT
3' ss Score
4.74
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CGTCCTCTGCCGCAGCGCTGTGACCGACGGCAGGGGTCGCCTCGCCGTGTATGAGCTCTTAGCAGATGCGGACGTTCAGCTCAGAGCCCGGATGGCCCAATTCCTTCTG
Seq A exon
CATCAAATTTGTATCATACCCATTGAAGAATTCTCAACAGAATATTTGAGACCTCACGTCAAATGCATTGCCAGTTATGGGCGATTTGTTAATCAAAG
Seq C2 exon
TGCCTCCTGTGTCTCCCTGGTCCCCGAAACTCCTCCGACAGCACTAATTTTGGATGTCCCAAGTGGTGGGTCTTCCCCTCTCCTGCCTGAGGATCCTTCACCTCCTGCCGATGCTGTTCTTGGGGTCACCTTGAAGGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGTGTATGAGCTCTTAGC
R:
GAGGTGAAGGATCCTCAGGCA
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]