RnoEX6058083 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3823485-3827077:+
Coord C1 exon
chr18:3823485-3823593
Coord A exon
chr18:3825119-3825216
Coord C2 exon
chr18:3826933-3827077
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTACTTATTTTCTTGACAGCAT
3' ss Score
8.02
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CATTCTGTGCAGGAGTGTGGTGATTGACAGCCTGAGTCGTACAGCTGTGTATGAGCTGTTGGCAGATGCAGACGTTCAGCTCAAGGTGCACGCGGCCCGTTTCCTTCTG
Seq A exon
CATCACATCTGCGTCATACCCGCTGAAGAATTCTCAACTGAATATTTGAGACCTCAAGTCCACTGCATTGCCAGCTATGGGCAGAGTGCCAATCCAAG
Seq C2 exon
TGCTTCCTGTGTCTCTGTGACCCATGAAACTCCTCCAACAGCCCTAATTTTGGATGCTACGAGTGGGGGCCATTTCTCTCCCCTGCCTCATGAGCCTTCCTCTCCTGCAGATGTTACTAATGGAGTTACTCTGAAGGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'31-29,'31-28,33-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.306
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTGTATGAGCTGTTGGC
R:
AGGAGAGGAAGGCTCATGAGG
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]