GgaEX6021365 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106334356-106337760:+
Coord C1 exon
chr2:106334356-106334464
Coord A exon
chr2:106335301-106335398
Coord C2 exon
chr2:106337595-106337760
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAATTGTGCTTATTTTTCAGCAT
3' ss Score
7.48
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
TTTCCTTTGTCGTAGTGTTGTCGTTGATGATAGGAATCGCATTGCAGCTTATGACCTTCTAGCAGATACAAAGGTACATCTTCAGGCATCATCAATTAATTTTCTTCTG
Seq A exon
CATAAGGTTTGTATTATATCAGCTGAAGAATTTTCATTAGAATATGTGAATCCTAAAGTGCACTGCTTAGCTGTTTATAGGAGCACCCATGACAGAAG
Seq C2 exon
TGTAACATGCATTCCCTCAGTGTATGAAACTCCACCAGCAACTTTGGTTTTGGATGCATTCGGGGATGGGAAAATCTCTGAAGTACAAAGAAACATACTTCATCGTCCACTGAGTGCCCCTTTATCTTCTGACTCAGTTGATGGGTTCACCTTGACATCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGTCGTAGTGTTGTCGT
R:
CCATCCCCGAATGCATCCAAA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]