GgaEX6021365 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102839023-102842496:+
Coord C1 exon
chr2:102839023-102839131
Coord A exon
chr2:102839968-102840065
Coord C2 exon
chr2:102842262-102842496
Length
98 bp
Sequences
Splice sites
3' ss Seq
TAATTGTGCTTATTTTTCAGCAT
3' ss Score
7.48
5' ss Seq
AAGGTAACG
5' ss Score
10.19
Exon sequences
Seq C1 exon
TTTCCTTTGTCGTAGTGTTGTCGTTGATGATAGGAATCGCATTGCAGCTTATGACCTTCTAGCAGATACAAAGGTACATCTTCAGGCATCATCAATTAATTTTCTTCTG
Seq A exon
CATAAGGTTTGTATTATATCAGCTGAAGAATTTTCATTAGAATATGTGAATCCTAAAGTGCACTGCTTAGCTGTTTATAGGAGCACCCATGACAGAAG
Seq C2 exon
TGTAACATGCATTCCCTCAGTGTATGAAACTCCACCAGCAACTTTGGTTTTGGATGCATTCGGGGATGGGAAAATCTCTGAAGTACAAAGAAACATACTTCATCGTCCACTGAGTGCCCCTTTATCTTCTGACTCAGTTGATGGGTTCACCTTGACATCATTACAGGTAGCTCATAATTTGAAACTACTGTTTCTGAAGTCACAAATGATGTTCTTAGAAAATTTCTGTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'28-37,'28-36,29-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTTGTCGTAGTGTTGTCGT
R:
CCATCCCCGAATGCATCCAAA
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]