MmuEX6000323 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12468252-12472317:+
Coord C1 exon
chr18:12468252-12468360
Coord A exon
chr18:12469853-12469950
Coord C2 exon
chr18:12472182-12472317
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTACTTATTTTCTTGACAGTAT
3' ss Score
7.72
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CATCCCGTGCAGGAGTGTGGTGATTGACAGCCTGAGTCGCACGGCTGTACATGAGCTGTTGGCAGATGCAGACATTCAGCTCAAGGCGCACATGGCCCATTTCCTTTTG
Seq A exon
TATCACATTTGTATTATACCAGCTGAAGAATTCTCAACTGAATATTTGAGACCTCAAGTCCACTGCATTGCCAGCTACAGGCAGCATGCTAATCCAAG
Seq C2 exon
TGCTTCCTGTGTCTCCCTGGCCCATGAAACTCCTCCAACAGCCTCAATTTTGGATGCTACAAGTAGGGGCCTTTTCTCTGCCCTACCTCATGAGCCTTCCTCTCCTGCAGATGGAGTTACTCTGAAGGCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'29-31,'29-28,33-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTACATGAGCTGTTGGCA
R:
GGAGAGGAAGGCTCATGAGGT
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types