BtaEX6091845 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33174429-33177253:-
Coord C1 exon
chr24:33177109-33177253
Coord A exon
chr24:33176113-33176253
Coord C2 exon
chr24:33174429-33174590
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCGTGGTTTTCTTTGATAGGAA
3' ss Score
8.16
5' ss Seq
AAGGTACGC
5' ss Score
10.4
Exon sequences
Seq C1 exon
ATGCAGGCCCAGGATCACAGGGCGGCAGTGTGACCGGTGCGCTCCCGGCTTCTACCGCTTTCCTGAGTGCCTCCCCTGCCACTGCAGCAGAGATGGGACCGAGCCGGGAGTCTGTGACCCAGGCACCGGGGCATGTCTCTGCAAG
Seq A exon
GAAAACGTGCAAGGCACAGAATGCAACATGTGTCGGGAAGGGTCATTCTACCTGGACCCAGCGAATCCCAAGGGTTGTACCAGCTGCTTTTGTTTCGGAGCCAGTCATCACTGTCACAGCACACTTAAGAGAAGGGCTAAG
Seq C2 exon
CTTGTGGACATGATGGGCTGGCGCCTGCAGACAGCAGACGGAGTGGACATCCCCGTCTCCTTCAACCCCGGCAGCAGCAGTGTGGTGGCCGACCTCCAGGAACTGCCCGCCACGGTCCATAGCGCGTCCTGGGTCGCCCCGCCTTCCTACCTGGGGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(8.1=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTACCGCTTTCCTGAGTGC
R:
CTTGTCCCCCAGGTAGGAAGG
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]