GgaEX1032800 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106344087-106345803:+
Coord C1 exon
chr2:106344087-106344231
Coord A exon
chr2:106345006-106345146
Coord C2 exon
chr2:106345639-106345803
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCAACCATGCCTTAACAGGAG
3' ss Score
7.35
5' ss Seq
AAGGTGTAT
5' ss Score
2.71
Exon sequences
Seq C1 exon
ATGCAAACCAGGAATAAGAGGACGACAGTGTGATCGGTGTGCTCCAGGTACTTATGATTTCCCGAACTGCATACCATGTAAATGTAACAGAGATGGAACTGAACCAGATGTTTGTGATCCTCAGACAGGAATTTGTCTCTGCAAG
Seq A exon
GAGAATGTTGAAGGTGCAGAATGTGATATTTGCCGACCCGGATCATTTTATCTGGACCCTTCTAATCCCAAGGGATGCACCACTTGTTTTTGTTTTGGGGTAACAAGCAGCTGTCGCAGCACAAATCGTCGTCGAACCAAG
Seq C2 exon
TTTGTGGACATGAGGAACTGGCGCTTGGAGGCAATGGATGAAAATATTGACATTCCTGTCACTTTCAATCCAGTCAGTAATAGTGTGGTGGCTGATGTTCAAGAATTGCCTGCTTCAGTGCACAGTTTGTACTGGAAAGCACCGCCATCTTACCTGGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'38-38,'38-37,39-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(8.0=20.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACAGTGTGATCGGTGTG
R:
TGCACTGAAGCAGGCAATTCT
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]