GgaEX1032800 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102848754-102850470:+
Coord C1 exon
chr2:102848754-102848898
Coord A exon
chr2:102849673-102849813
Coord C2 exon
chr2:102850306-102850470
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTCAACCATGCCTTAACAGGAG
3' ss Score
7.35
5' ss Seq
AAGGTGTAT
5' ss Score
2.71
Exon sequences
Seq C1 exon
ATGCAAACCAGGAATAAGAGGACGACAGTGTGATCGGTGTGCTCCAGGTACTTATGATTTCCCGAACTGCATACCATGTAAATGTAACAGAGATGGAACTGAACCAGATGTTTGTGATCCTCAGACAGGAATTTGTCTCTGCAAG
Seq A exon
GAGAATGTTGAAGGTGCAGAATGTGATATTTGCCGACCCGGATCATTTTATCTGGACCCTTCTAATCCCAAGGGATGCACCACTTGTTTTTGTTTTGGGGTAACAAGCAGCTGTCGCAGCACAAATCGTCGTCGAACCAAG
Seq C2 exon
TTTGTGGACATGAGGAACTGGCGCTTGGAGGCAATGGATGAAAATATTGACATTCCTGTCACTTTCAATCCAGTCAGTAATAGTGTGGTGGCTGATGTTCAAGAATTGCCTGCTTCAGTGCACAGTTTGTACTGGAAAGCACCGCCATCTTACCTGGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'39-48,'39-47,40-48
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGACAGTGTGATCGGTGTG
R:
TGCACTGAAGCAGGCAATTCT
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]