MmuEX7032095 @ mm10
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12490919-12495427:+
Coord C1 exon
chr18:12490919-12491063
Coord A exon
chr18:12491472-12491612
Coord C2 exon
chr18:12495266-12495427
Length
141 bp
Sequences
Splice sites
3' ss Seq
CAGGACTCATTCTTCAACAGGAA
3' ss Score
6.58
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGCAAGCCTAGAGTCACAGGGCAGCAGTGTGACAAGTGTGCTCCTGGCTTCTACCAGTTCCCTGAGTGTGTCCCCTGCAGCTGTAACAGAGATGGGACTGAGCCCAGCGTATGTGACCCAGAGACTGGGGCTTGCATGTGCAAG
Seq A exon
GAAAATGTAGAGGGCCCCCAATGTCAACTGTGTCGAGAAGGATCATTCTACCTGGACCCAACAAACCCAAAGGGTTGTACCAAGTGCTTCTGTTTTGGAGTGAATACTGACTGTCAGAGTTCGCATAAGCAACGAGCTAAG
Seq C2 exon
TTTGTAGACATGATGGGCTGGCGTCTGGAGACAGCAGATGGAGTTGATGTCCCTGTGTCCTTCAACCCTGGCAGCAACAGCATGGTGGCAGATCTGCAGGAGCTGCCACCCTCAGTTCACAGTGCATCCTGGGTGGCACCTCCATCCTACCTAGGTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'41-42,'41-41,43-42=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.167
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(8.1=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGTGACAAGTGTGCTC
R:
GGATGCACTGTGAACTGAGGG
Band lengths:
251-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types