RnoEX6058077 @ rn6
Exon Skipping
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3849448-3853441:+
Coord C1 exon
chr18:3849448-3849592
Coord A exon
chr18:3850018-3850158
Coord C2 exon
chr18:3853280-3853441
Length
141 bp
Sequences
Splice sites
3' ss Seq
CAGGACTCATTCTTCAACAGGAA
3' ss Score
6.58
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTGCAAGCCTAGAGTCACGGGGCAGCAGTGTGACAAGTGTGCTCCTGGCTTCTACCACTTCCCTGAGTGTGTCCCCTGCAGCTGTAACAGAGATGGGACTGAGCCCGGAGTATGCGACCCAGGGACTGGGGCTTGCATGTGCAAG
Seq A exon
GAAAATGTGGAGGGCCCCCAGTGTCAATTTTGTCGAGAAGGATCATTCTACCTGGACTCCGCCAACCCAGAGGGTTGTACCAGGTGCTTCTGTTTCGGAGTGAATACTGACTGTCGGAGTTCACACAAGCGAAGAGCCAAG
Seq C2 exon
TTTGTAGACATGATGGGCTGGCGTCTGGAGACAGCAGATGGAGTTGATGTCCCCGTGTCCTTCAACCCCAGCAGCAACAGCGTGGTTGCTGATCTGCAGGAACTGCCGTCCTCAGTCCACAGTGCATCCTGGGTGGCACCTCCATCCTACCTAGGTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300-'44-41,'44-37,45-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(51.0=51.0),PF0005319=Laminin_EGF=PU(44.9=44.9)
A:
PF0005319=Laminin_EGF=PD(51.0=53.2)
C2:
PF0005213=Laminin_B=PU(8.1=20.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGCTTCTACCACTTCCC
R:
CCTAGGTAGGATGGAGGTGCC
Band lengths:
258-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]