BtaEX6093071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1809144-1820580:-
Coord C1 exon
chr22:1820420-1820580
Coord A exon
chr22:1817005-1817193
Coord C2 exon
chr22:1809144-1809259
Length
189 bp
Sequences
Splice sites
3' ss Seq
GTGTATTTTTCTTTGCCTAGATA
3' ss Score
7.47
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATGGCTGAAATTTGAAGAGGACGTTGAAGATGGTGGTGACCGGTGGAGTAAACCTTATGTGGCAACTCTTTCTTTACATAGTCTTTTTGAGCTAAGAAGTTGCATCTTAAATGGAACAGTCATGCTGGATATGAGAGCAAGCACTCTCGATGAAATAGCAG
Seq A exon
ATATGGTACTGGACAACATGATCGCCTCTGGCCAGTTGGACGAGTCCATCAGAGAGAATGTCAGAGAAGCCCTTCTAAAGAGGCACCACCATCAGAATGAGAAGAGGTTCACCAGCCGGATCCCCCTAGTTCGTTCTTTTGCAGACATAGGCAAGAAACATTCTGACCCTCACTTGCTTGAAAGGAACG
Seq C2 exon
GTATTTTGGCCTCTCCACAGTCTGCACCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATGAAAGGTAATGGAAGTGGAGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'13-12,'13-9,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.270 C2=0.897
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PU(17.5=85.5)
A:
PF075658=Band_3_cyto=FE(23.5=100)
C2:
PF075658=Band_3_cyto=FE(14.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAAATTTGAAGAGGACGT
R:
TCTCTGCTTCCTCCACTTCCA
Band lengths:
251-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]